PRKCQ-AS1 Gene

Name PRKCQ antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nLong noncoding RNA PRKCQ‐AS1 is highly expressed in colorectal cancer tissues and cells, and its elevated levels are associated with a poor prognosis. Mechanistic studies have revealed that PRKCQ‐AS1 predominantly localizes to the cytoplasm, where it binds argonaute 2 and functions within the RNA-induced silencing complex. Through this action, PRKCQ‐AS1 acts as a competing endogenous RNA for miR‑1287‑5p, sequestering this microRNA and thereby reducing its tumor suppressor functions. This interaction results in enhanced proliferation and migratory capacities of colorectal cancer cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "In addition, miR‑1287‑5p normally targets the oncogene YBX1 for repression. By sponging miR‑1287‑5p, PRKCQ‑AS1 upregulates YBX1 at both the mRNA and protein levels, further promoting colorectal cancer progression. Rescue experiments conducted in vitro and in vivo have shown that overexpression of YBX1 partially reverses the inhibitory effects on proliferation and migration seen upon PRKCQ‑AS1 knockdown, underlining the critical role of the miR‑1287‑5p/YBX1 axis in mediating the oncogenic effects of PRKCQ‑AS1."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Guoce Cui, HongLi Zhao, Lina Li "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA PRKCQ-AS1 promotes CRC cell proliferation and migration via modulating miR-1287-5p/YBX1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.29712"}], "href": "https://doi.org/10.1002/jcb.29712"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32619070"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32619070"}]}]}]}
NCBI Gene ID 439949
API
Download Associations
Predicted Functions View PRKCQ-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View PRKCQ-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View PRKCQ-AS1's ARCHS4 Predicted Functions.

Functional Associations

PRKCQ-AS1 has 774 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.

Click the + buttons to view associations for PRKCQ-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of PRKCQ-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of PRKCQ-AS1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of PRKCQ-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with PRKCQ-AS1 gene from the CellMarker Gene-Cell Type Associations dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of PRKCQ-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of PRKCQ-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of PRKCQ-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of PRKCQ-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of PRKCQ-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of PRKCQ-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with PRKCQ-AS1 gene from the HuBMAP Azimuth Cell Type Annotations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of PRKCQ-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of PRKCQ-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of PRKCQ-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.