PTPRG-AS1 Gene

Name PTPRG antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nLncRNA PTPRG‐AS1 is emerging as a critical oncogenic regulator in various cancers. In epithelial ovarian cancer, for instance, its overexpression correlates with advanced stage, high grade, metastasis, and poor patient survival, suggesting its promise as a prognostic biomarker. In addition, despite documented oncogenic properties in diverse neoplasms, its specific role in modulating radiosensitivity—for example, in nonsmall cell lung cancer—remains to be fully elucidated."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMechanistic studies have revealed that PTPRG‐AS1 functions as a competing endogenous RNA. In lung adenocarcinoma, for example, PTPRG‐AS1 sponges miR‑124‑3p to upregulate cyclin D1 (CCND1), thereby driving cell cycle progression and proliferation. Similarly, in nasopharyngeal carcinoma, PTPRG‐AS1 modulates radiosensitivity by sequestering miR‑124‑3p to elevate LHX2 expression, which then activates the Notch pathway to attenuate the response to radiotherapy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurthermore, PTPRG‐AS1 contributes to tumor progression through additional molecular mechanisms. In triple‐negative breast cancer, transcriptional activation by POU2F2 elevates PTPRG‐AS1 levels, which in turn sponges miR‑376c‑3p to upregulate SLC7A11, thereby modulating ferroptosis and promoting proliferation. In another mechanism operative in nasopharyngeal carcinoma, upregulation of PTPRG‐AS1 by HOXA10 enhances its binding to RNA‐binding protein HuR, leading to stabilization of USP1 mRNA and stimulation of cell proliferation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xue-Ying Ren, Wei-Bin Yang, Yun Tian "}, {"type": "b", "children": [{"type": "t", "text": "Overexpression of long noncoding RNA PTPRG-AS1 is associated with poor prognosis in epithelial ovarian cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Rev Assoc Med Bras (1992) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1590/1806-9282.66.7.948"}], "href": "https://doi.org/10.1590/1806-9282.66.7.948"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32844927"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32844927"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Qiang Ma, Rungui Niu, Wei Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Noncoding RNA PTPRG Antisense RNA 1 Reduces Radiosensitivity of Nonsmall Cell Lung Cancer Cells Via Regulating MiR-200c-3p/TCF4."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Technol Cancer Res Treat (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/1533033820942615"}], "href": "https://doi.org/10.1177/1533033820942615"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33174523"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33174523"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yang Xue, Mingqiang Diao, Jing Lyu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Noncoding RNAs PTPRG Antisense RNA 1 Targets Cyclin D1 to Facilitate Cell Proliferation in Lung Adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Biother Radiopharm (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1089/cbr.2021.0168"}], "href": "https://doi.org/10.1089/cbr.2021.0168"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34767727"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34767727"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Zhangquan Shen, Yang Wu, Guijun He "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA PTPRG-AS1/microRNA-124-3p regulates radiosensitivity of nasopharyngeal carcinoma via the LIM Homeobox 2-dependent Notch pathway through competitive endogenous RNA mechanism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2022.2037364"}], "href": "https://doi.org/10.1080/21655979.2022.2037364"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35300558"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35300558"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jun Li, Pei-Ting Li, Wei Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "POU2F2-mediated upregulation of lncRNA "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "PTPRG-AS1"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " inhibits ferroptosis in breast cancer via miR-376c-3p/SLC7A11 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Epigenomics (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2217/epi-2023-0100"}], "href": "https://doi.org/10.2217/epi-2023-0100"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38318853"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38318853"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "He Zhou, Chang Deng, Yue Xi "}, {"type": "b", "children": [{"type": "t", "text": "Mechanism of HOXA10 in nasopharyngeal carcinoma cell proliferation through the PTPRG-AS1/USP1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biochem Mol Toxicol (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jbt.70025"}], "href": "https://doi.org/10.1002/jbt.70025"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "39445487"}], "href": "https://pubmed.ncbi.nlm.nih.gov/39445487"}]}]}]}
NCBI Gene ID 100506994
API
Download Associations
Predicted Functions View PTPRG-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View PTPRG-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View PTPRG-AS1's ARCHS4 Predicted Functions.

Functional Associations

PTPRG-AS1 has 796 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.

Click the + buttons to view associations for PTPRG-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of PTPRG-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of PTPRG-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with PTPRG-AS1 gene from the CellMarker Gene-Cell Type Associations dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of PTPRG-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of PTPRG-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of PTPRG-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of PTPRG-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of PTPRG-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of PTPRG-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of PTPRG-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of PTPRG-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.