PWWP3A Gene

Name PWWP domain containing 3A, DNA repair factor
Description Enables nucleosome binding activity. Involved in DNA repair and chromatin organization. Located in cytosol and nucleoplasm. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nWhile the provided abstracts primarily focus on two distinct cellular systems—the mitochondrial electron transport chain and chromatin organization—they also underscore the importance of modular domains in protein function. In one study, the intricate architecture and subunit arrangement of mitochondrial complex I were elucidated, demonstrating how hydrophobic and hydrophilic subcomplexes organize to sustain oxidative phosphorylation and overall mitochondrial health."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In a seemingly different arena, another investigation highlighted the role of a PWWP domain‐containing protein—EXPAND1/MUM1—in chromatin architecture. Upon DNA damage, EXPAND1/MUM1 rapidly accumulates at break sites through its interaction with 53BP1, promoting local chromatin decondensation and facilitating proper checkpoint activation and repair mechanisms to ultimately enhance cell survival."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAlthough none of the abstracts explicitly reference PWWP3A, the functional insights provided on EXPAND1/MUM1 suggest that proteins bearing PWWP domains (including PWWP3A, by extension) are likely to serve as architectural factors within the nucleus. They may mediate dynamic chromatin changes in response to cellular stress or DNA damage by partnering with key regulators such as 53BP1. In contrast, the remaining studies describe aspects of mitochondrial complex I integrity—including its assembly, the interplay of nuclear- and mitochondrial-encoded subunits, and the pathological outcomes stemming from its deficiency such as those implicated in cardiac hypertrophy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " \n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nTaken together, while three of the abstracts detail the mitochondrial complexes essential for energy metabolism and cardiac function, the findings related to the PWWP domain in EXPAND1/MUM1 offer an important conceptual parallel. They imply that PWWP domain proteins such as PWWP3A may similarly function as chromatin modulators—a capacity critical for orchestrating structural changes in the nucleus that enable effective DNA damage signaling and repair. This duality underscores the broader theme that specialized domains, whether in mitochondrial or nuclear proteins, underpin the complex regulatory networks fundamental to cell survival.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "L A Sazanov, S Y Peak-Chew, I M Fearnley, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Resolution of the membrane domain of bovine complex I into subcomplexes: implications for the structural organization of the enzyme."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochemistry (2000)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1021/bi000335t"}], "href": "https://doi.org/10.1021/bi000335t"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "10852722"}], "href": "https://pubmed.ncbi.nlm.nih.gov/10852722"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Michael S Y Huen, Jun Huang, Justin W C Leung, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of chromatin architecture by the PWWP domain-containing DNA damage-responsive factor EXPAND1/MUM1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2009.12.040"}], "href": "https://doi.org/10.1016/j.molcel.2009.12.040"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20347427"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20347427"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Saskia J G Hoefs, Richard J Rodenburg, Jan A M Smeitink, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Molecular base of biochemical complex I deficiency."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mitochondrion (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mito.2012.07.106"}], "href": "https://doi.org/10.1016/j.mito.2012.07.106"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22820119"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22820119"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xingjuan Shi, Yu Zhang, Ru Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ndufa7 plays a critical role in cardiac hypertrophy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.15921"}], "href": "https://doi.org/10.1111/jcmm.15921"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32989924"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32989924"}]}]}]}
NCBI Gene ID 84939
API
Download Associations
Predicted Functions View PWWP3A's ARCHS4 Predicted Functions.
Co-expressed Genes View PWWP3A's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View PWWP3A's ARCHS4 Predicted Functions.

Functional Associations

PWWP3A has 1,931 functional associations with biological entities spanning 5 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 33 datasets.

Click the + buttons to view associations for PWWP3A from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of PWWP3A gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of PWWP3A gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CellMarker Gene-Cell Type Associations cell types associated with PWWP3A gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of PWWP3A gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of PWWP3A gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with PWWP3A protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of PWWP3A protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by PWWP3A gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Curated Gene-Disease Association Evidence Scores 2025 diseases involving PWWP3A gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with PWWP3A gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2023 biological processes involving PWWP3A gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving PWWP3A gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing PWWP3A protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing PWWP3A protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by PWWP3A gene from the curated GO Molecular Function Annotations 2023 dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by PWWP3A gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of PWWP3A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of PWWP3A gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of PWWP3A gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
LINCS L1000 CMAP CRISPR Knockout Consensus Signatures gene perturbations changing expression of PWWP3A gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by PWWP3A gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of PWWP3A gene from the NIBR DRUG-seq U2OS MoA Box dataset.
PFOCR Pathway Figure Associations 2023 pathways involving PWWP3A protein from the PFOCR Pathway Figure Associations 2023 dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PWWP3A gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PWWP3A gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of PWWP3A gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of PWWP3A gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of PWWP3A gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of PWWP3A gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of PWWP3A gene from the Sci-Plex Drug Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of PWWP3A protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of PWWP3A protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with PWWP3A protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.