| Name | RAB9B, member RAS oncogene family pseudogene 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nDchs1 is a key component of an evolutionarily conserved signaling system that regulates planar cell polarity and tissue morphogenesis. Expression studies in mice reveal that Dchs1 is expressed in distinct mesenchymal domains with a complementary pattern to other pathway members, and its protein product plays a pivotal role in organizing cellular architecture—such as in neural progenitor apical membranes—by partnering with Fat cadherins. Gene‐targeted mutations in Dchs1 have demonstrated multi‐organ defects, underscoring its role as a ligand in the Dchs1–Fat4 pathway. Detailed structural analyses also indicate that the Dchs1 ectodomain, with its non‐Ca²⁺–binding regions, can adopt flexible, bent configurations that likely facilitate interactions in confined intercellular spaces."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFunctionally, Dchs1–Fat4 signaling is critical for coordinating the balance between progenitor proliferation and differentiation during organogenesis. In the kidney, loss of Dchs1 (or its binding partner Fat4) leads to expansion of the nephron progenitor pool and disruption of normal morphogenesis, while similar mutations result in mitral valve prolapse by impairing valve morphogenesis and cellular patterning in cardiac tissues. Additional studies have probed the role of this signaling axis in the lymphatic vasculature, suggesting that it may broadly influence intercellular communication and organ architecture."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMoreover, Dchs1 is essential for proper skeletal and craniofacial development. In the developing sternum and vertebrae, Dchs1–Fat4 signaling governs cell orientation, condensation, and proliferation, ensuring appropriate skeletal dimensions and patterning. Its function extends to osteoblast differentiation, where loss of Dchs1 delays maturation and alters the behavior of progenitor cells—findings that recapitulate aspects of the human Van Maldergem syndrome. In some genetic contexts, aberrations in Dchs1, including transposable element insertions that dramatically reduce its expression, result in neonatal lethality, underscoring its critical developmental roles."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Rebecca Rock, Sabrina Schrauth, Manfred Gessler "}, {"type": "b", "children": [{"type": "t", "text": "Expression of mouse dchs1, fjx1, and fat-j suggests conservation of the planar cell polarity pathway identified in Drosophila."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Dyn (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/dvdy.20515"}], "href": "https://doi.org/10.1002/dvdy.20515"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16059920"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16059920"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Takashi Ishiuchi, Kazuyo Misaki, Shigenobu Yonemura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mammalian Fat and Dachsous cadherins regulate apical membrane organization in the embryonic cerebral cortex."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.200811030"}], "href": "https://doi.org/10.1083/jcb.200811030"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19506035"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19506035"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yaopan Mao, Joanna Mulvaney, Sana Zakaria, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Characterization of a Dchs1 mutant mouse reveals requirements for Dchs1-Fat4 signaling during mammalian development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.057166"}], "href": "https://doi.org/10.1242/dev.057166"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21303848"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21303848"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yoshikazu Tsukasaki, Naoyuki Miyazaki, Atsushi Matsumoto, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Giant cadherins Fat and Dachsous self-bend to organize properly spaced intercellular junctions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1418990111"}], "href": "https://doi.org/10.1073/pnas.1418990111"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25355906"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25355906"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Mazdak Bagherie-Lachidan, Antoine Reginensi, Qun Pan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Stromal Fat4 acts non-autonomously with Dchs1/2 to restrict the nephron progenitor pool."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.122648"}], "href": "https://doi.org/10.1242/dev.122648"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26116661"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26116661"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Yaopan Mao, Philippa Francis-West, Kenneth D Irvine "}, {"type": "b", "children": [{"type": "t", "text": "Fat4/Dchs1 signaling between stromal and cap mesenchyme cells influences nephrogenesis and ureteric bud branching."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.122630"}], "href": "https://doi.org/10.1242/dev.122630"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26116666"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26116666"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Ronen Durst, Kimberly Sauls, David S Peal, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mutations in DCHS1 cause mitral valve prolapse."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature14670"}], "href": "https://doi.org/10.1038/nature14670"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26258302"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26258302"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Francoise Pujol, Tina Hodgson, Ines Martinez-Corral, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Dachsous1-Fat4 Signaling Controls Endothelial Cell Polarization During Lymphatic Valve Morphogenesis-Brief Report."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arterioscler Thromb Vasc Biol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/ATVBAHA.117.309818"}], "href": "https://doi.org/10.1161/ATVBAHA.117.309818"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28705793"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28705793"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Yaopan Mao, Anna Kuta, Ivan Crespo-Enriquez, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Dchs1-Fat4 regulation of polarized cell behaviours during skeletal morphogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncomms11469"}], "href": "https://doi.org/10.1038/ncomms11469"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27145737"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27145737"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Anna Kuta, Yaopan Mao, Tina Martin, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Dchs1-Fat4 regulation of osteogenic differentiation in mouse."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.176776"}], "href": "https://doi.org/10.1242/dev.176776"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31358536"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31358536"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Yuki Miyasaka, Takeshi Kobayashi, Naoya Gotoh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Neonatal lethality of mouse A/J-7"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "SM"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": " consomic strain is caused by an insertion mutation in the Dchs1 gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mamm Genome (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00335-022-09966-9"}], "href": "https://doi.org/10.1007/s00335-022-09966-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36434174"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36434174"}]}]}]}
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| Synonyms | RAB9P1 |
| NCBI Gene ID | 9366 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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RAB9BP1 has 951 functional associations with biological entities spanning 7 categories (molecular profile, organism, chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 30 datasets.
Click the + buttons to view associations for RAB9BP1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of RAB9BP1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of RAB9BP1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of RAB9BP1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| BioGPS Cell Line Gene Expression Profiles | cell lines with high or low expression of RAB9BP1 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset. | |
| BioGPS Human Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of RAB9BP1 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of RAB9BP1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of RAB9BP1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of RAB9BP1 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of RAB9BP1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| CMAP Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of RAB9BP1 gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of RAB9BP1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at RAB9BP1 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of RAB9BP1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of RAB9BP1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GDSC Cell Line Gene Expression Profiles | cell lines with high or low expression of RAB9BP1 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing RAB9BP1 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of RAB9BP1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of RAB9BP1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of RAB9BP1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of RAB9BP1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of RAB9BP1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| HuGE Navigator Gene-Phenotype Associations | phenotypes associated with RAB9BP1 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of RAB9BP1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of RAB9BP1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of RAB9BP1 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of RAB9BP1 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain RAB9BP1 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations | gene perturbations changing expression of RAB9BP1 gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at RAB9BP1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of RAB9BP1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |