| HGNC Family | RNA binding motif containing (RBM) |
| Name | RNA binding motif protein, Y-linked, family 1, member E |
| Description | This gene encodes a protein containing an RNA-binding motif in the N-terminus and four SRGY (serine, arginine, glycine, tyrosine) boxes in the C-terminus. Multiple copies of this gene are found in the AZFb azoospermia factor region of chromosome Y and the encoded protein is thought to be involved in spermatogenesis. Most copies of this locus are pseudogenes, although six highly similar copies have full-length ORFs and are considered functional. Four functional copies of this gene are found within inverted repeat IR2; two functional copies of this gene are found in palindrome P3, along with two copies of PTPN13-like, Y-linked. [provided by RefSeq, Jul 2008] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe presynaptic active zone is orchestrated by a network of proteins that ensure the proper timing and extent of neurotransmitter release. In these studies, proteins belonging to the CAST/ELKS family are shown to tightly regulate synaptic vesicle availability and release dynamics. For example, deletion of the active zone protein ELKS2α in mice led to an increase in inhibitory, but not excitatory, transmitter release by enlarging the readily releasable pool of vesicles without altering most ultrastructural features of synapses."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the context of specialized synapses, such as in rod photoreceptors, the depletion of CAST results in smaller active zones with reduced Ca²⁺ channel clustering and overall diminished release capacity. This structural scaling of the release machinery, manifesting in both impaired rod transmitter release and decreased visual sensitivity, underscores the importance of active zone size in controlling transmission rates."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAt the molecular level, CAST interacts directly with voltage-dependent Ca²⁺ channels, with its association (notably via the VDCC β₄-subunit) modifying the channels’ biophysical properties, such as shifting their voltage dependence toward hyperpolarized potentials. These alterations likely contribute to fine-tuning calcium influx in response to depolarization and thereby regulating neurotransmitter release."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional layers of regulation come from posttranslational modifications of CAST, as evidenced by phosphorylation by the protein kinase SAD-B. Phosphorylation of a specific N-terminal residue on CAST modulates the rate at which the readily releasable pool is replenished, thereby controlling short-term synaptic depression. Phosphomimetic and phosphonull variants of CAST produce opposing effects on this vesicle reloading process, indicating a precise, activity-dependent regulatory mechanism at the nerve terminal."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurthermore, CAST plays a dual role by not only influencing the dynamics of vesicle recycling after endocytosis but also by stabilizing the neurotransmitter content (quantal size) in synaptic vesicles. This dual function is critical for maintaining synaptic efficacy during prolonged activity and preventing excessive synaptic depression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFinally, coordinated function between CAST and ELKS is essential for proper neurotransmission, as demonstrated in forebrain synapses. While CAST is dominant, ELKS is capable of partially supporting its function. Nonetheless, simultaneous deletion of both proteins disrupts the integrity of sensory-to-motor networks, culminating in severe behavioral deficits such as impaired exploration and failure to suckle in neonatal mice."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIt is important to note that none of the provided abstracts directly address the function of RBMY1E. Instead, they focus on the roles of CAST/ELKS proteins in regulating presynaptic active zone architecture and neurotransmitter release. Therefore, the functional insights summarized here pertain specifically to the CAST/ELKS protein network rather than RBMY1E.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Pascal S Kaeser, Lunbin Deng, Andrés E Chávez, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ELKS2alpha/CAST deletion selectively increases neurotransmitter release at inhibitory synapses."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuron.2009.09.019"}], "href": "https://doi.org/10.1016/j.neuron.2009.09.019"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19874790"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19874790"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Susanne tom Dieck, Dana Specht, Nicola Strenzke, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Deletion of the presynaptic scaffold CAST reduces active zone size in rod photoreceptors and impairs visual processing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1523/JNEUROSCI.0752-12.2012"}], "href": "https://doi.org/10.1523/JNEUROSCI.0752-12.2012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22933801"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22933801"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Shigeki Kiyonaka, Hiroshi Nakajima, Yoshinori Takada, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Physical and functional interaction of the active zone protein CAST/ERC2 and the β-subunit of the voltage-dependent Ca(2+) channel."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biochem (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/jb/mvs054"}], "href": "https://doi.org/10.1093/jb/mvs054"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22577167"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22577167"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Sumiko Mochida, Yamato Hida, Shota Tanifuji, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SAD-B Phosphorylation of CAST Controls Active Zone Vesicle Recycling for Synaptic Depression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2016.08.020"}], "href": "https://doi.org/10.1016/j.celrep.2016.08.020"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27626661"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27626661"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Shizuka Kobayashi, Yamato Hida, Hiroyoshi Ishizaki, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The active zone protein CAST regulates synaptic vesicle recycling and quantal size in the mouse hippocampus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Neurosci (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/ejn.13331"}], "href": "https://doi.org/10.1111/ejn.13331"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27422015"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27422015"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Akari Hagiwara, Shun Hamada, Yamato Hida, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Double deletion of the active zone proteins CAST/ELKS in the mouse forebrain causes high mortality of newborn pups."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Brain (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13041-020-0557-x"}], "href": "https://doi.org/10.1186/s13041-020-0557-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31996256"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31996256"}]}]}]}
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| Proteins | RBY1E_HUMAN |
| NCBI Gene ID | 378950 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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RBMY1E has 393 functional associations with biological entities spanning 8 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, structural feature, cell line, cell type or tissue, gene, protein or microRNA) extracted from 36 datasets.
Click the + buttons to view associations for RBMY1E from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of RBMY1E gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of RBMY1E gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of RBMY1E gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of RBMY1E gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores | cellular components containing RBMY1E protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing RBMY1E protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with RBMY1E protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with RBMY1E gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of RBMY1E gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of RBMY1E gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of RBMY1E gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of RBMY1E gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of RBMY1E gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of RBMY1E gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GO Biological Process Annotations 2015 | biological processes involving RBMY1E gene from the curated GO Biological Process Annotations 2015 dataset. | |
| GO Biological Process Annotations 2023 | biological processes involving RBMY1E gene from the curated GO Biological Process Annotations 2023 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving RBMY1E gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2015 | cellular components containing RBMY1E protein from the curated GO Cellular Component Annotations 2015 dataset. | |
| GO Cellular Component Annotations 2023 | cellular components containing RBMY1E protein from the curated GO Cellular Component Annotations 2023 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing RBMY1E protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GO Molecular Function Annotations 2015 | molecular functions performed by RBMY1E gene from the curated GO Molecular Function Annotations 2015 dataset. | |
| GO Molecular Function Annotations 2023 | molecular functions performed by RBMY1E gene from the curated GO Molecular Function Annotations 2023 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of RBMY1E gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| InterPro Predicted Protein Domain Annotations | protein domains predicted for RBMY1E protein from the InterPro Predicted Protein Domain Annotations dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of RBMY1E gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of RBMY1E gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Kinase Library Serine Threonine Kinome Atlas | kinases that phosphorylate RBMY1E protein from the Kinase Library Serine Threonine Atlas dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of RBMY1E gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of RBMY1E gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| LOCATE Curated Protein Localization Annotations | cellular components containing RBMY1E protein in low- or high-throughput protein localization assays from the LOCATE Curated Protein Localization Annotations dataset. | |
| NURSA Protein Complexes | protein complexs containing RBMY1E protein recovered by IP-MS from the NURSA Protein Complexes dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of RBMY1E gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of RBMY1E gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of RBMY1E gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of RBMY1E gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with RBMY1E protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |