RETREG1 Gene

Name reticulophagy regulator 1
Description The protein encoded by this gene is a cis-Golgi transmembrane protein that may be necessary for the long-term survival of nociceptive and autonomic ganglion neurons. Mutations in this gene are a cause of hereditary sensory and autonomic neuropathy type IIB (HSAN IIB), and this gene may also play a role in susceptibility to vascular dementia. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Nov 2011]
Summary
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Loss‐of‐function mutations in RETREG1 have been linked to sensory and autonomic neuropathies, emphasizing its importance in neuronal survival."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nStructurally, RETREG1 possesses a reticulon homology domain (RHD) featuring two wedge‐shaped transmembrane helical hairpins and amphipathic helices that enable it to induce membrane curvature, oligomerize, and facilitate ER membrane fragmentation. Under conditions of ER stress, RETREG1 oligomerization is enhanced by CAMK2B‐mediated phosphorylation, a process that promotes localized ER scission necessary for efficient selective autophagy. In contrast, pathogenic mutations such as G216R disturb this regulation, causing hyperactive self‐association and excessive ER turnover which can trigger neuronal cell death."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "5"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its fundamental role in ER maintenance, RETREG1 is implicated in diverse physiological and pathological processes. It participates in the ER quality‐control network by selectively clearing misfolded client proteins, restricts flavivirus infection (whereby viral proteases even target RETREG1 to subvert ER‐phagy), and its expression is upregulated by nutrient‐responsive transcription factors to coordinate cellular responses to metabolic and developmental cues. Dysregulation of RETREG1 activity is associated with neurodegeneration, carcinogenesis, and impaired antiviral responses, underscoring its broad impact on cellular homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ingo Kurth, Torsten Pamminger, J Christopher Hennings, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mutations in FAM134B, encoding a newly identified Golgi protein, cause severe sensory and autonomic neuropathy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng.464"}], "href": "https://doi.org/10.1038/ng.464"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19838196"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19838196"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Aliaksandr Khaminets, Theresa Heinrich, Muriel Mari, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of endoplasmic reticulum turnover by selective autophagy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature14498"}], "href": "https://doi.org/10.1038/nature14498"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26040720"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26040720"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Alison Forrester, Chiara De Leonibus, Paolo Grumati, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A selective ER-phagy exerts procollagen quality control via a Calnexin-FAM134B complex."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.15252/embj.201899847"}], "href": "https://doi.org/10.15252/embj.201899847"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30559329"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30559329"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Ramachandra M Bhaskara, Paolo Grumati, Javier Garcia-Pardo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Curvature induction and membrane remodeling by FAM134B reticulon homology domain assist selective ER-phagy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-019-10345-3"}], "href": "https://doi.org/10.1038/s41467-019-10345-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31147549"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31147549"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xiao Jiang, Xinyi Wang, Xianming Ding, et al. "}, {"type": "b", "children": [{"type": "t", "text": "FAM134B oligomerization drives endoplasmic reticulum membrane scission for ER-phagy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.15252/embj.2019102608"}], "href": "https://doi.org/10.15252/embj.2019102608"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31930741"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31930741"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Nicholas J Lennemann, Carolyn B Coyne "}, {"type": "b", "children": [{"type": "t", "text": "Dengue and Zika viruses subvert reticulophagy by NS2B3-mediated cleavage of FAM134B."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Autophagy (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15548627.2016.1265192"}], "href": "https://doi.org/10.1080/15548627.2016.1265192"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28102736"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28102736"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Laura Cinque, Chiara De Leonibus, Maria Iavazzo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "MiT/TFE factors control ER-phagy via transcriptional regulation of FAM134B."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.15252/embj.2020105696"}], "href": "https://doi.org/10.15252/embj.2020105696"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32716134"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32716134"}]}]}]}
NCBI Gene ID 54463
API
Download Associations
Predicted Functions View RETREG1's ARCHS4 Predicted Functions.
Co-expressed Genes View RETREG1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View RETREG1's ARCHS4 Predicted Functions.

Functional Associations

RETREG1 has 2,788 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 25 datasets.

Click the + buttons to view associations for RETREG1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CellMarker Gene-Cell Type Associations cell types associated with RETREG1 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of RETREG1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing RETREG1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with RETREG1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of RETREG1 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by RETREG1 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Curated Gene-Disease Association Evidence Scores 2025 diseases involving RETREG1 gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with RETREG1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2023 biological processes involving RETREG1 gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving RETREG1 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing RETREG1 protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing RETREG1 protein from the curated GO Cellular Component Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of RETREG1 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of RETREG1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of RETREG1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by RETREG1 gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of RETREG1 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
LINCS L1000 CMAP CRISPR Knockout Consensus Signatures gene perturbations changing expression of RETREG1 gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by RETREG1 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of RETREG1 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of RETREG1 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of RETREG1 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of RETREG1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of RETREG1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with RETREG1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.