REXO5 Gene

Name RNA exonuclease 5
Description Predicted to enable exonuclease activity. Predicted to be involved in rRNA 3'-end processing. Located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe PF20 orthologues in mammals, commonly known as SPAG16, are critical components of the axonemal central apparatus that regulate the mechanical function of ciliary and flagellar motility. Investigations in mouse models and Chlamydomonas have shown that the larger isoform, SPAG16L, localizes to the central pair region of the axoneme and is essential for proper flagellar movement, as its absence results in sperm motility defects and reduced fertility despite normal-appearing microtubule structures."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMoreover, SPAG16L engages in key protein–protein interactions that modulate its function. It interacts with other central apparatus proteins such as SPAG6 and associates with testis-specific kinases like TSSK2, which phosphorylate SPAG16L and likely influence dynein motor activity essential for microtubule sliding and flagellar bending. In addition, a smaller isoform, SPAG16S, predominantly found in the nucleus of male germ cells, is implicated in the transcriptional upregulation of SPAG16L, linking axonemal structural integrity with gene regulatory mechanisms in spermatogenesis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "5"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to their well‐defined roles in motile cilia and flagella, these proteins are also expressed in non‐ciliated tissues. This broader distribution suggests additional functions, such as stabilizing cytoplasmic microtubules, which may contribute to maintaining cellular architecture beyond the confines of ciliary structures."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Zhibing Zhang, Rossana Sapiro, David Kapfhamer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A sperm-associated WD repeat protein orthologous to Chlamydomonas PF20 associates with Spag6, the mammalian orthologue of Chlamydomonas PF16."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.22.22.7993-8004.2002"}], "href": "https://doi.org/10.1128/MCB.22.22.7993-8004.2002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12391165"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12391165"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Zhibing Zhang, Igor Kostetskii, Waixing Tang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Deficiency of SPAG16L causes male infertility associated with impaired sperm motility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biol Reprod (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1095/biolreprod.105.049254"}], "href": "https://doi.org/10.1095/biolreprod.105.049254"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16382026"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16382026"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Zhibing Zhang, Xuening Shen, Brian H Jones, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Phosphorylation of mouse sperm axoneme central apparatus protein SPAG16L by a testis-specific kinase, TSSK2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biol Reprod (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1095/biolreprod.107.066308"}], "href": "https://doi.org/10.1095/biolreprod.107.066308"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18367677"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18367677"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "David R Nagarkatti-Gude, Ruth Jaimez, Scott C Henderson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Spag16, an axonemal central apparatus gene, encodes a male germ cell nuclear speckle protein that regulates SPAG16 mRNA expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0020625"}], "href": "https://doi.org/10.1371/journal.pone.0020625"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21655194"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21655194"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Kathleen A Lesich, Zhibing Zhang, Courtney B Kelsch, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional deficiencies and a reduced response to calcium in the flagellum of mouse sperm lacking SPAG16L."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biol Reprod (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1095/biolreprod.109.080143"}], "href": "https://doi.org/10.1095/biolreprod.109.080143"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20042536"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20042536"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jimena Alciaturi, Gabriel Anesetti, Florencia Irigoin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Distribution of sperm antigen 6 (SPAG6) and 16 (SPAG16) in mouse ciliated and non-ciliated tissues."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Histol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10735-019-09817-z"}], "href": "https://doi.org/10.1007/s10735-019-09817-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30911868"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30911868"}]}]}]}
NCBI Gene ID 81691
API
Download Associations
Predicted Functions View REXO5's ARCHS4 Predicted Functions.
Co-expressed Genes View REXO5's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View REXO5's ARCHS4 Predicted Functions.

Functional Associations

REXO5 has 1,625 functional associations with biological entities spanning 6 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 30 datasets.

Click the + buttons to view associations for REXO5 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of REXO5 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of REXO5 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of REXO5 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing REXO5 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 cellular components containing REXO5 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with REXO5 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of REXO5 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by REXO5 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with REXO5 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with REXO5 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving REXO5 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing REXO5 protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing REXO5 protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by REXO5 gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by REXO5 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of REXO5 gene from the GTEx eQTL 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of REXO5 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of REXO5 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
KEGG Pathways 2026 pathways involving REXO5 protein from the KEGG Pathways 2026 dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of REXO5 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
LINCS L1000 CMAP CRISPR Knockout Consensus Signatures gene perturbations changing expression of REXO5 gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of REXO5 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of REXO5 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of REXO5 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of REXO5 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of REXO5 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of REXO5 gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of REXO5 gene from the Sci-Plex Drug Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of REXO5 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with REXO5 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.