RFLNB Gene

Name refilin B
Description Enables filamin binding activity. Predicted to be involved in several processes, including actin filament bundle organization; negative regulation of bone mineralization involved in bone maturation; and negative regulation of chondrocyte development. Predicted to act upstream of or within actin cytoskeleton organization and epithelial to mesenchymal transition. Predicted to be located in actin cytoskeleton and cytoplasm. Predicted to be active in actin filament bundle. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nDNA repair glycosylases that remove oxidized pyrimidine lesions play critical roles in maintaining genomic integrity by excising toxic bases such as thymine glycol from DNA. In mammals, several enzymes, including the homologues of bacterial Endonuclease III (mNTH1) and Endonuclease VIII (NEIL1), exhibit overlapping substrate specificity. For example, NEIL1 has been shown to efficiently remove thymine glycol and 5‐hydroxyuracil — in both double‐ and single‐stranded DNA — and even acts on mispaired bases in U:C and T:C mismatches, suggesting a back‐up function to mNTH1 (PMIDs."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " Moreover, alternative glycosylase activities evident in mNth1 knockout mice indicate that complementary repair pathways exist to resolve oxidative DNA damage when the primary enzyme is absent."}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nThe activities of these glycosylases extend across both nuclear and mitochondrial compartments. In mitochondria, mNTH1 appears to be the principal enzyme for thymine glycol repair, while other glycosylases contribute to the removal of additional oxidized pyrimidines such as 5,6-dihydrouracil and 5-hydroxycytosine (PMIDs."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In addition, impaired glycosylase activities have been linked to defects at telomeric repeats, where oxidative damage potentiates telomere attrition, fragility, and recombination, thereby emphasizing the synergistic role of base excision repair and telomerase in telomere maintenance (PMID."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond lesion removal, the coordinated actions of these enzymes are essential for preventing mutagenesis and preserving genomic stability. Repair of oxidatively induced base lesions such as FapyG and FapyA is largely mediated by OGG1 and NTH1 in different cellular contexts, while NEIL1 also contributes in mitochondria when conventional glycosylases are compromised. The loss or mutation of these enzymes leads to increased oxidative base damage, the accumulation of replication stress and double-stranded DNA breaks, and even tumor predisposition, as seen in double knockout models and in knockin mice carrying a dominant NTHL1 (NTH1) variant (PMIDs."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "11"}]}, {"type": "t", "text": " Furthermore, while the interplay between the base excision repair and mismatch repair systems modulates cellular sensitivity to oxidative stress, it is clear that multiple, sometimes overlapping, pathways are integral to mitigating the potentially deleterious mutagenic consequences of reactive oxygen species."}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Masashi Takao, Shin-ichiro Kanno, Tatsuya Shiromoto, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel nuclear and mitochondrial glycosylases revealed by disruption of the mouse Nth1 gene encoding an endonuclease III homolog for repair of thymine glycols."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/emboj/cdf350"}], "href": "https://doi.org/10.1093/emboj/cdf350"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12093749"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12093749"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Maria T A Ocampo, Wenren Chaung, Dina R Marenstein, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Targeted deletion of mNth1 reveals a novel DNA repair enzyme activity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.22.17.6111-6121.2002"}], "href": "https://doi.org/10.1128/MCB.22.17.6111-6121.2002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12167705"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12167705"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Masashi Takao, Shin-Ichiro Kanno, Kumiko Kobayashi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A back-up glycosylase in Nth1 knock-out mice is a functional Nei (endonuclease VIII) homologue."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M206884200"}], "href": "https://doi.org/10.1074/jbc.M206884200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12200441"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12200441"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Rhoderick H Elder, Grigory L Dianov "}, {"type": "b", "children": [{"type": "t", "text": "Repair of dihydrouracil supported by base excision repair in mNTH1 knock-out cell extracts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M208153200"}], "href": "https://doi.org/10.1074/jbc.M208153200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12401779"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12401779"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Bensu Karahalil, Nadja C de Souza-Pinto, Jason L Parsons, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Compromised incision of oxidized pyrimidines in liver mitochondria of mice deficient in NTH1 and OGG1 glycosylases."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M301617200"}], "href": "https://doi.org/10.1074/jbc.M301617200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12819227"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12819227"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Haritha Vallabhaneni, Nathan O'Callaghan, Julia Sidorova, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Defective repair of oxidative base lesions by the DNA glycosylase Nth1 associates with multiple telomere defects."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1003639"}], "href": "https://doi.org/10.1371/journal.pgen.1003639"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23874233"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23874233"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Holly Miller, Andrea S Fernandes, Elena Zaika, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Stereoselective excision of thymine glycol from oxidatively damaged DNA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkh190"}], "href": "https://doi.org/10.1093/nar/gkh190"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14726482"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14726482"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Michael K Chan, Maria T Ocampo-Hafalla, Vladimir Vartanian, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Targeted deletion of the genes encoding NTH1 and NEIL1 DNA N-glycosylases reveals the existence of novel carcinogenic oxidative damage to DNA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "DNA Repair (Amst) (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.dnarep.2009.03.001"}], "href": "https://doi.org/10.1016/j.dnarep.2009.03.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19346169"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19346169"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Anna J Ucher, Erin K Linehan, George W Teebor, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The DNA glycosylases Ogg1 and Nth1 do not contribute to Ig class switching in activated mouse splenic B cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0036061"}], "href": "https://doi.org/10.1371/journal.pone.0036061"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22536455"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22536455"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "N Cooley, R H Elder, A C Povey "}, {"type": "b", "children": [{"type": "t", "text": "The effect of Msh2 knockdown on toxicity induced by tert-butyl-hydroperoxide, potassium bromate, and hydrogen peroxide in base excision repair proficient and deficient cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Res Int (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2013/152909"}], "href": "https://doi.org/10.1155/2013/152909"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23984319"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23984319"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Carolyn G Marsden, Lipsa Das, Timothy P Nottoli, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mouse Embryonic Fibroblasts Isolated From Nthl1 D227Y Knockin Mice Exhibit Defective DNA Repair and Increased Genome Instability."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "DNA Repair (Amst) (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.dnarep.2021.103247"}], "href": "https://doi.org/10.1016/j.dnarep.2021.103247"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34826736"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34826736"}]}]}]}
NCBI Gene ID 359845
API
Download Associations
Predicted Functions View RFLNB's ARCHS4 Predicted Functions.
Co-expressed Genes View RFLNB's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View RFLNB's ARCHS4 Predicted Functions.

Functional Associations

RFLNB has 2,277 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 32 datasets.

Click the + buttons to view associations for RFLNB from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of RFLNB gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CCLE Cell Line Proteomics Cell lines associated with RFLNB protein from the CCLE Cell Line Proteomics dataset.
CellMarker Gene-Cell Type Associations cell types associated with RFLNB gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of RFLNB gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of RFLNB gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing RFLNB protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 cellular components containing RFLNB protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with RFLNB protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of RFLNB protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with RFLNB gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with RFLNB gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
GO Biological Process Annotations 2023 biological processes involving RFLNB gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving RFLNB gene from the curated GO Biological Process Annotations2025 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by RFLNB gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by RFLNB gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of RFLNB gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of RFLNB gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of RFLNB gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with RFLNB gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of RFLNB gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of RFLNB gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by RFLNB gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of RFLNB gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of RFLNB gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of RFLNB gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of RFLNB gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of RFLNB gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of RFLNB gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of RFLNB gene from the Sci-Plex Drug Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of RFLNB protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of RFLNB protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with RFLNB protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.