RIOX1 Gene

Name ribosomal oxygenase 1
Description Enables peptidyl-histidine dioxygenase activity and protein demethylase activity. Predicted to be involved in negative regulation of DNA-templated transcription; negative regulation of osteoblast differentiation; and protein demethylation. Located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
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It catalyzes hydroxylation reactions—as seen in its modification of ribosomal protein Rpl8—and recognizes substrates via a conserved NHXH motif. NO66 is predominantly a nucleolar protein; however, it also localizes to distinct nucleoplasmic domains associated with heterochromatic clusters. These findings suggest that beyond its role in osteoblast differentiation, NO66 participates in ribosome biogenesis and chromatin remodeling by modulating epigenetic marks."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nClinically, aberrant expression of NO66/RIOX1 has been correlated with several pathological conditions. Elevated NO66 levels are observed in certain cancers—including prostate cancer, glioblastoma, and acute myeloid leukemia—where it appears to promote tumor cell survival, proliferation, and invasiveness through its epigenetic regulatory functions. In addition, in non-neoplastic contexts such as chronic kidney disease and cardiomyocyte injury, altered NO66 expression is linked to changes in cell survival pathways (for example, via modulation of PI3K/Akt signaling), underscoring its potential impact on tissue homeostasis and apoptosis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jens Eilbracht, Michaela Reichenzeller, Michaela Hergt, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NO66, a highly conserved dual location protein in the nucleolus and in a special type of synchronously replicating chromatin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e03-08-0623"}], "href": "https://doi.org/10.1091/mbc.e03-08-0623"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14742713"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14742713"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Krishna M Sinha, Hideyo Yasuda, Madelene M Coombes, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of the osteoblast-specific transcription factor Osterix by NO66, a Jumonji family histone demethylase."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/emboj.2009.332"}], "href": "https://doi.org/10.1038/emboj.2009.332"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19927124"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19927124"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xing Zhou, Yue Tao, Minhao Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Purification, crystallization and preliminary crystallographic analysis of histone lysine demethylase NO66 from Homo sapiens."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Acta Crystallogr Sect F Struct Biol Cryst Commun (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1107/S174430911201740X"}], "href": "https://doi.org/10.1107/S174430911201740X"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22750859"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22750859"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yue Tao, Minhao Wu, Xing Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structural insights into histone demethylase NO66 in interaction with osteoblast-specific transcription factor osterix and gene repression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M112.446849"}], "href": "https://doi.org/10.1074/jbc.M112.446849"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23620590"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23620590"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Chengliang Wang, Qiongdi Zhang, Tianrong Hang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structure of the JmjC domain-containing protein NO66 complexed with ribosomal protein Rpl8."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Acta Crystallogr D Biol Crystallogr (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1107/S1399004715012948"}], "href": "https://doi.org/10.1107/S1399004715012948"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26327385"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26327385"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Ana Sílvia Pires-Luís, Márcia Vieira-Coimbra, Filipa Quintela Vieira, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression of histone methyltransferases as novel biomarkers for renal cell tumor diagnosis and prognostication."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Epigenetics (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15592294.2015.1103578"}], "href": "https://doi.org/10.1080/15592294.2015.1103578"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26488939"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26488939"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Yujiro Nishizawa, Naohiro Nishida, Masamitsu Konno, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Clinical Significance of Histone Demethylase NO66 in Invasive Colorectal Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Surg Oncol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1245/s10434-016-5395-9"}], "href": "https://doi.org/10.1245/s10434-016-5395-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27473587"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27473587"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Krishna M Sinha, Rozita Bagheri-Yarmand, Sharmistha Lahiri, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Oncogenic and osteolytic functions of histone demethylase NO66 in castration-resistant prostate cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41388-019-0774-x"}], "href": "https://doi.org/10.1038/s41388-019-0774-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30858546"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30858546"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Qing Wang, Pei Y Liu, Tao Liu, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Mechanisms Regulating Muscle Protein Synthesis in CKD."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Am Soc Nephrol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1681/ASN.2019121277"}], "href": "https://doi.org/10.1681/ASN.2019121277"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32764136"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32764136"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Hanyu Deng, Bo Yu, Yang Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NO66 overexpression rescues ethanol-induced cell apoptosis in human AC16 cardiomyocytes by suppressing PTEN and activating the PI3K/Akt signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Acta Biochim Biophys Sin (Shanghai) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/abbs/gmaa100"}], "href": "https://doi.org/10.1093/abbs/gmaa100"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33085743"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33085743"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Weijia Yu, Christoph Lutz, Alwin Krämer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The JmjC-domain protein NO66/RIOX-1 affects the balance between proliferation and maturation in acute myeloid leukemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Cell Res (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.yexcr.2021.112566"}], "href": "https://doi.org/10.1016/j.yexcr.2021.112566"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33745927"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33745927"}]}]}]}
NCBI Gene ID 79697
API
Download Associations
Predicted Functions View RIOX1's ARCHS4 Predicted Functions.
Co-expressed Genes View RIOX1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View RIOX1's ARCHS4 Predicted Functions.

Functional Associations

RIOX1 has 1,013 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 28 datasets.

Click the + buttons to view associations for RIOX1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of RIOX1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CCLE Cell Line Proteomics Cell lines associated with RIOX1 protein from the CCLE Cell Line Proteomics dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of RIOX1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI U2OS Cell Map Protein Localization Assemblies assemblies containing RIOX1 protein from integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing RIOX1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with RIOX1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of RIOX1 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with RIOX1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with RIOX1 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with RIOX1 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
GO Biological Process Annotations 2023 biological processes involving RIOX1 gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving RIOX1 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing RIOX1 protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing RIOX1 protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by RIOX1 gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by RIOX1 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of RIOX1 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of RIOX1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of RIOX1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of RIOX1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of RIOX1 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of RIOX1 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Reactome Pathways 2024 pathways involving RIOX1 protein from the Reactome Pathways 2024 dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of RIOX1 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of RIOX1 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of RIOX1 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of RIOX1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with RIOX1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.