| Name | RNA 5'-phosphate and 3'-OH ligase 1 |
| Description | Enables RNA ligase (ATP) activity. Involved in response to reactive oxygen species. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRCOR1 is a key component of multiprotein corepressor complexes that regulate histone H3 lysine 4 demethylation and hence control lineage-specific gene expression during hematopoiesis. In erythroid and megakaryocytic differentiation, RCOR1 works in concert with LSD1 and transcription regulators (such as Gfi1b) to promote nucleosomal demethylation and drive proper erythroid maturation. In contrast, loss or imbalance of RCOR1—as seen when RCOR3 inhibits LSD1 activity or when RCOR1 is genetically ablated—leads to impaired erythroid differentiation, aberrant expression of stem‐ and myeloid-specific genes, and a shift from erythroid to myeloid cell fates."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the developing brain, RCOR1, together with its paralog RCOR2, forms complexes with transcription factors such as INSM1. This partnership plays a crucial role in transitioning neural progenitors from a proliferative to a differentiated state, ensuring proper neuronal and oligodendroglial output as well as the correct morphogenesis of brain structures. Disruption of RCOR1/2 function in neural progenitors results in an excess of undifferentiated cells and structural malformations in the embryonic brain."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the immune system, RCOR1 functions within the CoREST complex in Foxp3+ regulatory T cells, where it associates with LSD1 and other core components to repress large sets of genes and maintain Treg identity and suppressive functions. Conditional deletion of RCOR1 in Tregs impairs their ability to curb immune responses—evident by altered cytokine profiles, diminished suppression of homeostatic proliferation, and enhanced antitumor immunity—thereby highlighting the importance of RCOR1 in immune homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}]}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Huilan Yao, Devorah C Goldman, Tamilla Nechiporuk, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Corepressor Rcor1 is essential for murine erythropoiesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2013-11-538678"}], "href": "https://doi.org/10.1182/blood-2013-11-538678"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24652990"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24652990"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ghanshyam Upadhyay, Asif H Chowdhury, Bharat Vaidyanathan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Antagonistic actions of Rcor proteins regulate LSD1 activity and cellular differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1404292111"}], "href": "https://doi.org/10.1073/pnas.1404292111"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24843136"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24843136"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Caitlin E Monaghan, Tamilla Nechiporuk, Sophia Jeng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "REST corepressors RCOR1 and RCOR2 and the repressor INSM1 regulate the proliferation-differentiation balance in the developing brain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1620230114"}], "href": "https://doi.org/10.1073/pnas.1620230114"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28049845"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28049845"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yan Xiong, Liqing Wang, Eros Di Giorgio, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inhibiting the coregulator CoREST impairs Foxp3+ Treg function and promotes antitumor immunity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI131375"}], "href": "https://doi.org/10.1172/JCI131375"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31917688"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31917688"}]}]}]}
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| NCBI Gene ID | 91298 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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RLIG1 has 781 functional associations with biological entities spanning 6 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 17 datasets.
Click the + buttons to view associations for RLIG1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of RLIG1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of RLIG1 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of RLIG1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| CM4AI U2OS Cell Map Protein Localization Assemblies | assemblies containing RLIG1 protein from integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving RLIG1 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by RLIG1 gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of RLIG1 gene from the GTEx eQTL 2025 dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with RLIG1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of RLIG1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of RLIG1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of RLIG1 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of RLIG1 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of RLIG1 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of RLIG1 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of RLIG1 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of RLIG1 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of RLIG1 gene from the Sci-Plex Drug Perturbation Signatures dataset. | |