RMST Gene

Name rhabdomyosarcoma 2 associated transcript (non-protein coding)
Description This gene produces a long non-coding RNA that functions in neurogenesis by aiding in the association of Sox2 transcription factor to its target promoters. [provided by RefSeq, Dec 2017]
Summary
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RMST’s pivotal role in maintaining neural stem cell identity is further underscored by its involvement in neurological diseases such as Parkinson’s disease."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its developmental functions, RMST modulates diverse signaling pathways in multiple disease contexts through interactions with microRNAs and other regulatory networks. Genetic association studies have implicated RMST as one of several susceptibility loci in severe obesity, while differential expression of RMST (often identified as NCRMS in certain tumors) suggests a role in rhabdomyosarcoma subtyping. In ischemic stroke models, RMST acts as a competing endogenous RNA by sponging miR-377 to control SEMA3A expression, thereby modulating apoptotic and oxidative stress responses. Similarly, in colorectal cancer cells, RMST binds miR-27a-3p to elevate RXRα expression and inactivate oncogenic Wnt signaling, and in atherosclerotic models, RMST sequesters miR-224-3p to influence endothelial viability and inflammation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nEmerging evidence also highlights the potential clinical utility of RMST as a diagnostic and prognostic biomarker. Notably, altered RMST expression in serum has been leveraged to differentiate pathologic conditions, including carotid artery stenosis, thereby underscoring its promise as a noninvasive marker in cardiovascular diseases."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Shi-Yan Ng, Gireesh K Bogu, Boon Seng Soh, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "LncRNA RMST Regulates Neuronal Apoptosis and Inflammatory Response via Sponging miR-150-5p in Parkinson's Disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuroimmunomodulation (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000518212"}], "href": "https://doi.org/10.1159/000518212"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34515176"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34515176"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Eleanor Wheeler, Ni Huang, Elena G Bochukova, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng.2607"}], "href": "https://doi.org/10.1038/ng.2607"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23563609"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23563609"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Agnes S Chan, Paul S Thorner, Jeremy A Squire, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of a novel gene NCRMS on chromosome 12q21 with differential expression between rhabdomyosarcoma subtypes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/sj.onc.1205460"}], "href": "https://doi.org/10.1038/sj.onc.1205460"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12082533"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12082533"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Lei Zhao, Meng Zhang, Fang Yan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Knockdown of RMST Impedes Neuronal Apoptosis and Oxidative Stress in OGD/R-Induced Ischemic Stroke Via Depending on the miR-377/SEMA3A Signal Network."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurochem Res (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11064-020-03194-w"}], "href": "https://doi.org/10.1007/s11064-020-03194-w"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33409855"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33409855"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Dongliang Yin, Furong Xu, Ming Lu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA RMST promotes oxygen-glucose deprivation-induced injury in brain microvascular endothelial cells by regulating miR-204-5p/VCAM1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Life Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.lfs.2021.119244"}], "href": "https://doi.org/10.1016/j.lfs.2021.119244"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33607153"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33607153"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Shuo Chen, Liechen Ji, Yan Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA RMST suppresses the progression of colorectal cancer by competitively binding to miR-27a-3p/RXRα axis and inactivating Wnt signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Acta Biochim Biophys Sin (Shanghai) (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3724/abbs.2023065"}], "href": "https://doi.org/10.3724/abbs.2023065"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37246895"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37246895"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Tao Zhang, Cuina Feng, Xiang Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Abnormal expression of long non-coding RNA rhabdomyosarcoma 2-associated transcript (RMST) participates in the pathological mechanism of atherosclerosis by regulating miR-224-3p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2021.2023995"}], "href": "https://doi.org/10.1080/21655979.2021.2023995"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35067166"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35067166"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Cui Wang, Feng Zhao, Yunliang He, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA RMST serves as a diagnostic biomarker in patients with carotid artery stenosis and predicts the occurrence of cerebral ischemic event: A retrospective study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Vascular (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/17085381221100095"}], "href": "https://doi.org/10.1177/17085381221100095"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35531613"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35531613"}]}]}]}
Synonyms NCRMS, NCRNA00054, LINC00054
NCBI Gene ID 196475
API
Download Associations
Predicted Functions View RMST's ARCHS4 Predicted Functions.
Co-expressed Genes View RMST's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View RMST's ARCHS4 Predicted Functions.

Functional Associations

RMST has 1,086 functional associations with biological entities spanning 6 categories (molecular profile, disease, phenotype or trait, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 31 datasets.

Click the + buttons to view associations for RMST from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of RMST gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of RMST gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of RMST gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of RMST gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of RMST gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of RMST gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
CTD Gene-Disease Associations diseases associated with RMST gene/protein from the curated CTD Gene-Disease Associations dataset.
dbGAP Gene-Trait Associations traits associated with RMST gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at RMST gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of RMST gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of RMST gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GDSC Cell Line Gene Expression Profiles cell lines with high or low expression of RMST gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with RMST gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing RMST from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of RMST gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of RMST gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of RMST gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of RMST gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of RMST gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with RMST gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
GWASdb SNP-Disease Associations diseases associated with RMST gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with RMST gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with RMST gene from the HuBMAP Azimuth Cell Type Annotations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with RMST gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of RMST gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of RMST gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of RMST gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations gene perturbations changing expression of RMST gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of RMST gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at RMST gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of RMST gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.