RN7SK Gene

HGNC Family Non-coding RNAs
Name RNA, 7SK small nuclear
Description Predicted to be involved in negative regulation of transcription elongation by RNA polymerase II. Part of 7SK snRNP. [provided by Alliance of Genome Resources, Mar 2025]
Summary
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Moreover, dynamic phosphorylation and dephosphorylation events, as well as interactions with additional regulators, ensure that P-TEFb is correctly localized (for example in nuclear speckles) and functionally modulated for transcriptional elongation during both normal cellular homeostasis and response to environmental cues."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "17"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to modulating transcription elongation, RN7SK participates in broader gene regulatory networks by interfacing with chromatin remodelers and various RNA‐binding proteins. Through physical interactions with factors such as HMGA1, m6A RNA readers, and components of the little elongation complex, RN7SK not only influences enhancer activity and bidirectional transcription from promoters but also supports the synthesis of RNAPII‐dependent small nuclear and nucleolar RNAs. These multifaceted roles link RN7SK to key cellular processes—including stem cell proliferation and differentiation, cell cycle progression, senescence, and apoptosis—and underscore its involvement in pathological states ranging from viral infections to tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "18", "end_ref": "24"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ruichuan Chen, Zhiyuan Yang, Qiang Zhou "}, {"type": "b", "children": [{"type": "t", "text": "Phosphorylated positive transcription elongation factor b (P-TEFb) is tagged for inhibition through association with 7SK snRNA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M310044200"}], "href": "https://doi.org/10.1074/jbc.M310044200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14627702"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14627702"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Cyprien Dulac, Annemieke A Michels, Alessandro Fraldi, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "A positive feedback circuit between RN7SK snRNA and m"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "6"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": "A readers is essential for tumorigenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Ther (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ymthe.2022.12.013"}], "href": "https://doi.org/10.1016/j.ymthe.2022.12.013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36566349"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36566349"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Mozhgan Abasi, Javad Ranjbari, Hossein Ghanbarian "}, {"type": "b", "children": [{"type": "t", "text": "7SK small nuclear RNA (Rn7SK) induces apoptosis through intrinsic and extrinsic pathways in human embryonic kidney cell line."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Rep (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11033-023-08934-z"}], "href": "https://doi.org/10.1007/s11033-023-08934-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38193993"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38193993"}]}]}]}
Synonyms 7SK
NCBI Gene ID 125050
API
Download Associations
Predicted Functions View RN7SK's ARCHS4 Predicted Functions.
Co-expressed Genes View RN7SK's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View RN7SK's ARCHS4 Predicted Functions.

Functional Associations

RN7SK has 869 functional associations with biological entities spanning 6 categories (molecular profile, functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.

Click the + buttons to view associations for RN7SK from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of RN7SK gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of RN7SK gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of RN7SK gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with RN7SK gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing RN7SK from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of RN7SK gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of RN7SK gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of RN7SK gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of RN7SK gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of RN7SK gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of RN7SK gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Hub Proteins Protein-Protein Interactions interacting hub proteins for RN7SK from the curated Hub Proteins Protein-Protein Interactions dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of RN7SK gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of RN7SK gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by RN7SK gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
MiRTarBase microRNA Targets microRNAs targeting RN7SK gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset.