| HGNC Family | Non-coding RNAs |
| Name | RNA, 7SL, cytoplasmic 1 |
| Description | The signal recognition particle (SRP) is a cytoplasmic ribonucleoprotein complex that mediates cotranslational insertion of secretory proteins into the lumen of the endoplasmic reticulum. The SRP consists of 6 polypeptides (e.g., SRP19; MIM 182175) and a 7SL RNA molecule, such as RN7SL1, that is partially homologous to Alu DNA (Ullu and Weiner, 1984 [PubMed 6084597]).[supplied by OMIM, Jul 2008] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRN7SL1, commonly known as 7SL RNA, plays a central role in protein targeting as an essential scaffold within the signal recognition particle (SRP). Structural studies have revealed that RN7SL1 provides the backbone for the hierarchical assembly of the SRP complex by binding to key proteins such as SRP19 and SRP54, which in turn facilitate proper RNA folding and the formation of functional motifs required for the co‐translational targeting of nascent secretory and membrane proteins."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn cancer, deregulation of RN7SL1 has been implicated in promoting aggressive tumor behavior. In the tumor microenvironment, activation of stromal signaling pathways can increase RN7SL1 expression and disrupt its normal association with protective RNA‐binding proteins, resulting in the accumulation of “unshielded” RN7SL1 in exosomes. This unshielded RNA acts as a damage-associated molecular pattern (DAMP) to stimulate innate immune receptors—such as RIG-I—thereby driving inflammatory responses that enhance tumor growth, metastasis, and resistance to therapy. In parallel, overexpression of RN7SL1 in tumor cells can repress p53 translation, a process that is normally counteracted by the transcriptional repressor FOXP3, establishing a regulatory loop with significant implications for tumor progression."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nRN7SL1 is also co-opted by the innate antiviral machinery. In the context of retroviral infections, RN7SL1 is selectively packaged into viral particles where it serves as a critical cofactor for host cytidine deaminases such as APOBEC3G and APOBEC3F. This selective incorporation, mediated by interactions with the RNA-binding nucleocapsid domain of the viral Gag protein, is essential for the antiviral activity of these enzymes, as disruption of RN7SL1 packaging correlates with diminished antiviral defense."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFinally, emerging evidence highlights a role for RN7SL1 in neuroinflammatory processes. In Alzheimer’s disease models, knockdown of RN7SL1 has been shown to attenuate microglial activation in response to oligomeric amyloid‑β, leading to decreased production of proinflammatory cytokines and reduced neuronal damage. This positions RN7SL1 as a potential therapeutic target in the modulation of neuroimmune responses associated with neurodegeneration."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Chris Oubridge, Andreas Kuglstatter, Luca Jovine, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Crystal structure of SRP19 in complex with the S domain of SRP RNA and its implication for the assembly of the signal recognition particle."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s1097-2765(02)00530-0"}], "href": "https://doi.org/10.1016/s1097-2765(02"}, {"type": "t", "text": "00530-0) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12086622"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12086622"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Andreas Kuglstatter, Chris Oubridge, Kiyoshi Nagai "}, {"type": "b", "children": [{"type": "t", "text": "Induced structural changes of 7SL RNA during the assembly of human signal recognition particle."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Struct Biol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nsb843"}], "href": "https://doi.org/10.1038/nsb843"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12244299"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12244299"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yanhui Yang, Jingli Cheng, Huizhu Ren, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tumor FOXP3 represses the expression of long noncoding RNA 7SL."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2015.12.082"}], "href": "https://doi.org/10.1016/j.bbrc.2015.12.082"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26718402"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26718402"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Barzin Y Nabet, Yu Qiu, Jacob E Shabason, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Exosome RNA Unshielding Couples Stromal Activation to Pattern Recognition Receptor Signaling in Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2017.06.031"}], "href": "https://doi.org/10.1016/j.cell.2017.06.031"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28709002"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28709002"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jodie R Malcolm, Natasha K Leese, Philippa I Lamond-Warner, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Widespread association of ERα with RMRP and tRNA genes in MCF-7 cells and breast cancers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gene.2022.146280"}], "href": "https://doi.org/10.1016/j.gene.2022.146280"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35143945"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35143945"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Tao Wang, Chunjuan Tian, Wenyan Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "7SL RNA mediates virion packaging of the antiviral cytidine deaminase APOBEC3G."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Virol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/JVI.00892-07"}], "href": "https://doi.org/10.1128/JVI.00892-07"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17881443"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17881443"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Tao Wang, Chunjuan Tian, Wenyan Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Interaction with 7SL RNA but not with HIV-1 genomic RNA or P bodies is required for APOBEC3F virion packaging."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Biol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jmb.2007.11.017"}], "href": "https://doi.org/10.1016/j.jmb.2007.11.017"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18067920"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18067920"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Hanyou Liu, Jingying Li, Xue Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Profiling of long non-coding RNAs in hippocampal-entorhinal system subfields: impact of RN7SL1 on neuroimmune response modulation in Alzheimer's disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neuroinflammation (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12974-024-03083-x"}], "href": "https://doi.org/10.1186/s12974-024-03083-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38582873"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38582873"}]}]}]}
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| Synonyms | RN7SL, 7SL, RNSRP1, 7L1A |
| NCBI Gene ID | 6029 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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RN7SL1 has 773 functional associations with biological entities spanning 3 categories (functional term, phrase or reference, chemical, cell line, cell type or tissue) extracted from 7 datasets.
Click the + buttons to view associations for RN7SL1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of RN7SL1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with RN7SL1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of RN7SL1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of RN7SL1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of RN7SL1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of RN7SL1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of RN7SL1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |