RN7SL3 Gene

HGNC Family Non-coding RNAs
Name RNA, 7SL, cytoplasmic 3
Description The signal recognition particle (SRP) is a cytoplasmic ribonucleoprotein complex that mediates cotranslational insertion of secretory proteins into the lumen of the endoplasmic reticulum. The SRP consists of 6 polypeptides (e.g., SRP19; MIM 182175) and a 7SL RNA molecule, such as RN7SL3, that is partially homologous to Alu DNA (Ullu and Weiner, 1984 [PubMed 6084597]).[supplied by OMIM, Jul 2008]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRN7SL3 is a gene that encodes a full‐length 7SL RNA—a noncoding RNA that serves as a core component of the signal recognition particle, a ribonucleoprotein complex essential for directing nascent proteins to the endoplasmic reticulum. Detailed analyses have revealed that RN7SL3 is transcribed robustly by RNA polymerase III, owing in large part to its unique promoter architecture. In particular, RN7SL3 harbors two critical external promoter elements—a conserved ATF/CRE binding site and a TATA‐like sequence—as well as internal motifs resembling the A and B boxes that are typically required for efficient transcription. Notably, RN7SL3 RNA is synthesized at roughly twice the efficiency of its paralog RN7SL1, suggesting that its high-level expression may be pivotal for the proper assembly and function of the signal recognition particle."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "RN7SL3’s characterization is presented alongside studies of the transcription cofactor EYA4, which illustrate the diverse regulatory networks operating within the cell. EYA4 has been demonstrated to possess dual phosphatase activity that modulates the phosphorylation state of key signal transducers; for example, it enhances the innate immune response by stimulating interferon‑beta and CXCL10 production in macrophages challenged with undigested DNA from apoptotic cells. Furthermore, genetic studies in animal models link EYA4 dysregulation to profound auditory deficits and abnormal middle ear development, with mutations in EYA4 leading to sensorineural hearing loss and otitis media. Such findings underscore the critical role of transcriptional regulators in settings as varied as immune defense and sensory organ development."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "2", "end_ref": "4"}]}, {"type": "t", "text": "In addition, the broader physiological importance of these regulatory systems is emphasized by clinical observations linking truncating mutations in EYA4 to conditions such as hearing impairment and dilated cardiomyopathy. Together, the studies integrating RN7SL3 and EYA4 highlight a complex interplay between high-efficiency, noncoding RNA transcription—crucial for intracellular protein targeting—and transcriptional cofactor activities that govern cellular responses in immunity, auditory function, and cardiac health."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Markus Englert, Martha Felis, Volker Junker, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel upstream and intragenic control elements for the RNA polymerase III-dependent transcription of human 7SL RNA genes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochimie (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biochi.2004.10.012"}], "href": "https://doi.org/10.1016/j.biochi.2004.10.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15667936"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15667936"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yuzhou Zhang, Boyd M Knosp, Mark Maconochie, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A comparative study of Eya1 and Eya4 protein function and its implication in branchio-oto-renal syndrome and DFNA10."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Assoc Res Otolaryngol (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10162-004-4044-3"}], "href": "https://doi.org/10.1007/s10162-004-4044-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15492887"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15492887"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Frederic F S Depreux, Keith Darrow, David A Conner, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Eya4-deficient mice are a model for heritable otitis media."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI32899"}], "href": "https://doi.org/10.1172/JCI32899"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18219393"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18219393"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yasutaka Okabe, Teruyuki Sano, Shigekazu Nagata "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of the innate immune response by threonine-phosphatase of Eyes absent."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature08138"}], "href": "https://doi.org/10.1038/nature08138"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19561593"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19561593"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Tatjana Williams, Moritz Hundertmark, Peter Nordbeck, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Eya4 Induces Hypertrophy via Regulation of p27kip1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Circ Cardiovasc Genet (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/CIRCGENETICS.115.001134"}], "href": "https://doi.org/10.1161/CIRCGENETICS.115.001134"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26499333"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26499333"}]}]}]}
Synonyms RNSRP3, 7L30.2, RN7SL631P
NCBI Gene ID 378707
API
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Predicted Functions View RN7SL3's ARCHS4 Predicted Functions.
Co-expressed Genes View RN7SL3's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View RN7SL3's ARCHS4 Predicted Functions.

Functional Associations

RN7SL3 has 10 functional associations with biological entities spanning 2 categories (functional term, phrase or reference, cell line, cell type or tissue) extracted from 2 datasets.

Click the + buttons to view associations for RN7SL3 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
GeneRIF Biological Term Annotations biological terms co-occuring with RN7SL3 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of RN7SL3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.