RNU1-3 Gene

HGNC Family Non-coding RNAs
Name RNA, U1 small nuclear 3
Description Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025]
Summary
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It further orchestrates chromatin remodeling events, promoting accessibility at regulatory regions, and thereby drives cellular commitment in both adaptive and innate immune responses."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBATF also plays central roles in regulating effector functions and cellular metabolism. In CD8⁺ T cells, BATF expression—often modulated by cytokines such as IL‑21—sustains antiviral and antitumor responses by cooperating with IRF4 to control transcription factors (for example, T‐bet, Blimp‑1) while restraining premature effector molecule expression, thereby preventing exhaustion. In B cells, BATF contributes to immunoglobulin class switch recombination by activating key genes including activation‐induced cytidine deaminase and relevant germline transcripts. Moreover, BATF-mediated gene regulation extends to innate lymphoid cells and tissue‐resident regulatory T cells where its effects on enhancer accessibility and chromatin looping underlie cellular plasticity and homeostasis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "19"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its role in modulating lineage-specific transcription programs, BATF’s ability to reshape chromatin structure—including the recruitment of architectural proteins to establish enhancer–promoter loops—underscores its function as a versatile pioneer factor. Its tightly regulated expression is necessary for ensuring proper immune cell development, preventing aberrant inflammatory responses such as autoimmunity and allergic diseases, and even influencing outcomes in transplant rejection. The diverse functions of BATF have rendered it an attractive target for therapeutic modulation in contexts ranging from chronic infections and cancer to autoimmunity."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "20", "end_ref": "24"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Takeshi Senga, Takashi Iwamoto, Sean E Humphrey, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Group 3 innate lymphoid cells require BATF to regulate gut homeostasis in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Med (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1084/jem.20211861"}], "href": "https://doi.org/10.1084/jem.20211861"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36048018"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36048018"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Xingying Zhang, Chenze Zhang, Miaomiao Qiao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Depletion of BATF in CAR-T cells enhances antitumor activity by inducing resistance against exhaustion and formation of central memory cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Cell (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ccell.2022.09.013"}], "href": "https://doi.org/10.1016/j.ccell.2022.09.013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36240777"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36240777"}]}]}]}
Synonyms RNU1G3, HSD4
NCBI Gene ID 26869
API
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Predicted Functions View RNU1-3's ARCHS4 Predicted Functions.
Co-expressed Genes View RNU1-3's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View RNU1-3's ARCHS4 Predicted Functions.

Functional Associations

RNU1-3 has 102 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 1 datasets.

Click the + buttons to view associations for RNU1-3 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of RNU1-3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.