| HGNC Family | Non-coding RNAs |
| Name | RNA, U1 small nuclear 4 |
| Description | Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nIntegrin‐mediated cell–matrix interactions are central to the dynamic regulation of cell adhesion, spreading, and extracellular matrix (ECM) assembly. In particular, the α5β1 receptor—which binds fibronectin—modulates RhoA activity and governs focal adhesion distribution and cytoskeletal organization. Post‐translational modifications (for example, via GnT‐III) can alter α5 integrin N‐glycosylation, reducing its ligand affinity and thereby suppressing cell–matrix adhesion, while signaling cascades initiated “inside‐out” via kinases such as Akt further promote fibronectin fibrillogenesis and matrix assembly. Moreover, extracellular stimuli (such as chemerin) rapidly induce integrin clustering, thereby enhancing cell adhesion even in the absence of major changes in ligand affinity."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to regulating adhesion and migration, α5β1‐integrin signaling plays essential roles during development and vascular morphogenesis. Its engagement with fibronectin is critical for cardiac outflow tract formation, proper neural migration and cortical lamination, and the maintenance of cerebral vascular integrity. In hypoxic conditions, for example, rapid up‐regulation of fibronectin and associated integrins in the brain contributes to angiogenesis and vessel stabilization. Blockade or genetic ablation of specific integrin subunits in neuronal or endothelial lineages disrupts normal morphogenesis and leads to hemorrhagic complications or congenital heart defects, highlighting the indispensable developmental functions of this receptor."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAberrant integrin signaling and altered α5β1 expression are also strongly implicated in pathological processes. Elevated α5‐integrin levels have been associated with enhanced metastatic potential in melanoma, while dysregulated receptor recycling and clustering can influence viral entry pathways and promote inflammatory signaling cascades in endothelial cells. In chronic disease models, for instance, excessive fibronectin deposition via α5β1 drives inflammation in atherosclerosis and contributes to fibrotic remodeling in organs such as the liver and kidney. These diverse findings underscore how integrin α5β1 functions as a central hub—transducing both mechanical forces and biochemical signals—to mediate cell survival, migration, and tissue remodeling under both physiological and disease‐associated conditions."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "13", "end_ref": "20"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Erik H J Danen, Petra Sonneveld, Cord Brakebusch, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The fibronectin-binding integrins alpha5beta1 and alphavbeta3 differentially modulate RhoA-GTP loading, organization of cell matrix adhesions, and fibronectin fibrillogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.200205014"}], "href": "https://doi.org/10.1083/jcb.200205014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12486108"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12486108"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Tomoya Isaji, Jianguo Gu, Ryoko Nishiuchi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Introduction of bisecting GlcNAc into integrin alpha5beta1 reduces ligand binding and down-regulates cell adhesion and cell migration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M311627200"}], "href": "https://doi.org/10.1074/jbc.M311627200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14998999"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14998999"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Payaningal R Somanath, Eugene S Kandel, Nissim Hay, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Akt1 signaling regulates integrin activation, matrix recognition, and fibronectin assembly."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M700241200"}], "href": "https://doi.org/10.1074/jbc.M700241200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17562714"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17562714"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Rosie Hart, David R Greaves "}, {"type": "b", "children": [{"type": "t", "text": "Chemerin contributes to inflammation by promoting macrophage adhesion to VCAM-1 and fibronectin through clustering of VLA-4 and VLA-5."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.0902154"}], "href": "https://doi.org/10.4049/jimmunol.0902154"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20720202"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20720202"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Dongying Chen, Xia Wang, Dong Liang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Fibronectin signals through integrin α5β1 to regulate cardiovascular development in a cell type-specific manner."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2015.09.016"}], "href": "https://doi.org/10.1016/j.ydbio.2015.09.016"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26434918"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26434918"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jill Roberts, Leon de Hoog, Gregory J Bix "}, {"type": "b", "children": [{"type": "t", "text": "Mice deficient in endothelial α5 integrin are profoundly resistant to experimental ischemic stroke."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cereb Blood Flow Metab (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/0271678X15616979"}], "href": "https://doi.org/10.1177/0271678X15616979"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26661237"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26661237"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Xiaoli Sun, Yi Fu, Mingxia Gu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Activation of integrin α5 mediated by flow requires its translocation to membrane lipid rafts in vascular endothelial cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1524523113"}], "href": "https://doi.org/10.1073/pnas.1524523113"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26733684"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26733684"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Joseph H McCarty, Adam Lacy-Hulbert, Alain Charest, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Selective ablation of alphav integrins in the central nervous system leads to cerebral hemorrhage, seizures, axonal degeneration and premature death."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.01551"}], "href": "https://doi.org/10.1242/dev.01551"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15576410"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15576410"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Nidhi Batra, Sirisha Burra, Arlene J Siller-Jackson, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mechanical stress-activated integrin α5β1 induces opening of connexin 43 hemichannels."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1115967109"}], "href": "https://doi.org/10.1073/pnas.1115967109"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22331870"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22331870"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Richard Milner, Stephanie Hung, Bernadette Erokwu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Increased expression of fibronectin and the alpha 5 beta 1 integrin in angiogenic cerebral blood vessels of mice subject to hypobaric hypoxia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Neurosci (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mcn.2008.01.013"}], "href": "https://doi.org/10.1016/j.mcn.2008.01.013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18343155"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18343155"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Ashok Mittal, Maria Pulina, Shuan-Yu Hou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Fibronectin and integrin alpha 5 play requisite roles in cardiac morphogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2013.06.010"}], "href": "https://doi.org/10.1016/j.ydbio.2013.06.010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23791818"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23791818"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "David Garciadiego-Cázares, Carlos Rosales, Masaru Katoh, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Coordination of chondrocyte differentiation and joint formation by alpha5beta1 integrin in the developing appendicular skeleton."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.01345"}], "href": "https://doi.org/10.1242/dev.01345"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15329344"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15329344"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Hua-Bei Guo, Intaek Lee, Beau T Bryan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Deletion of mouse embryo fibroblast N-acetylglucosaminyltransferase V stimulates alpha5beta1 integrin expression mediated by the protein kinase C signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M413532200"}], "href": "https://doi.org/10.1074/jbc.M413532200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15615721"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15615721"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Feng Qian, Zi-Chao Zhang, Xue-Feng Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Interaction between integrin alpha(5) and fibronectin is required for metastasis of B16F10 melanoma cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2005.06.039"}], "href": "https://doi.org/10.1016/j.bbrc.2005.06.039"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15979576"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15979576"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Lindsay R White, Jason B Blanchette, Li Ren, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The characterization of alpha5-integrin expression on tubular epithelium during renal injury."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Renal Physiol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajprenal.00212.2006"}], "href": "https://doi.org/10.1152/ajprenal.00212.2006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17018844"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17018844"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Maria L Valencik, Dongfang Zhang, Bonnie Punske, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Fibronectin- and vitronectin-induced microglial activation and matrix metalloproteinase-9 expression is mediated by integrins alpha5beta1 and alphavbeta5."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.178.12.8158"}], "href": "https://doi.org/10.4049/jimmunol.178.12.8158"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17548654"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17548654"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Vinay Bhaskar, Dong Zhang, Melvin Fox, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A function blocking anti-mouse integrin alpha5beta1 antibody inhibits angiogenesis and impedes tumor growth in vivo."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Transl Med (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1479-5876-5-61"}], "href": "https://doi.org/10.1186/1479-5876-5-61"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18042290"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18042290"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Mark D Bass, Mark R Morgan, Kirsty A Roach, et al. "}, {"type": "b", "children": [{"type": "t", "text": "p190RhoGAP is the convergence point of adhesion signals from alpha 5 beta 1 integrin and syndecan-4."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.200711129"}], "href": "https://doi.org/10.1083/jcb.200711129"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18541700"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18541700"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Kathryn L Schornberg, Charles J Shoemaker, Derek Dube, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Alpha5beta1-integrin controls ebolavirus entry by regulating endosomal cathepsins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0807578106"}], "href": "https://doi.org/10.1073/pnas.0807578106"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19416892"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19416892"}]}]}]}
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| Synonyms | U1E2, RNU1D2, RNU1G2, U1B2, RNU1F1, HSD7, U1D2, RNU1E2, HSD5, HSD6, RNU1G1, U1F, RNU1 |
| NCBI Gene ID | 6060 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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RNU1-4 has 158 functional associations with biological entities spanning 2 categories (functional term, phrase or reference, cell line, cell type or tissue) extracted from 2 datasets.
Click the + buttons to view associations for RNU1-4 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| GeneRIF Biological Term Annotations | biological terms co-occuring with RNU1-4 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of RNU1-4 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |