RNY3 Gene

HGNC Family Non-coding RNAs
Name RNA, Ro-associated Y3
Description Predicted to act upstream of or within DNA replication initiation and nuclear DNA replication. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent investigations into the molecular mechanisms underlying cellular transformation have revealed that, while protein‐coding factors such as translation initiation and elongation factors are implicated in cadmium‐induced oncogenesis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", noncoding RNAs have emerged as important regulatory molecules in cancer. Although one study focused on the up‐regulation of translation factors, subsequent research has shifted attention to a novel class of noncoding RNAs – the YRNAs – including RNY3, which appear to have independent roles in cell regulation.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the realm of mRNA processing, a distinct YRNA variant (Y3/Y3**) has been demonstrated to interact directly with the cleavage and polyadenylation specificity factor (CPSF). This interaction facilitates the recruitment of CPSF to the 3′ untranslated region of histone pre-mRNAs, thereby promoting accurate 3′ end processing and the proper assembly and dynamics of histone locus bodies, which are essential for histone gene expression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional evidence highlights the clinical significance of YRNAs: they have been identified as potential biomarkers in various malignancies, including urinary bladder cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Moreover, studies in immune cells have revealed that human RNY3 (hY3) is upregulated upon cell stimulation. Elevated hY3 levels in T lymphocytes not only reduce cell proliferation but also enhance the expression of the TH2 cytokine IL13. This dual effect, together with observations that hY3 can be transferred via exosomes to mediate intercellular communication, suggests a regulatory role in modulating inflammatory responses such as those observed in allergic asthma."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Pius Joseph, Yi-Xiong Lei, Tong-man Ong "}, {"type": "b", "children": [{"type": "t", "text": "Up-regulation of expression of translation factors--a novel molecular mechanism for cadmium carcinogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biochem (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1023/b:mcbi.0000007265.38475.f7"}], "href": "https://doi.org/10.1023/b:mcbi.0000007265.38475.f7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14971650"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14971650"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Marcel Köhn, Christian Ihling, Andrea Sinz, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Y3** ncRNA promotes the 3' end processing of histone mRNAs."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Dev (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gad.266486.115"}], "href": "https://doi.org/10.1101/gad.266486.115"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26443846"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26443846"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yuri Tolkach, Anna Franziska Stahl, Eva-Maria Niehoff, et al. "}, {"type": "b", "children": [{"type": "t", "text": "YRNA expression predicts survival in bladder cancer patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12885-017-3746-y"}], "href": "https://doi.org/10.1186/s12885-017-3746-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29126388"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29126388"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Miguel Estravís, Asunción García-Sánchez, Maria J Martin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RNY3 modulates cell proliferation and IL13 mRNA levels in a T lymphocyte model: a possible new epigenetic mechanism of IL-13 regulation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Physiol Biochem (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s13105-022-00920-6"}], "href": "https://doi.org/10.1007/s13105-022-00920-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36089628"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36089628"}]}]}]}
Synonyms Y3, HY3
NCBI Gene ID 6085
API
Download Associations
Predicted Functions View RNY3's ARCHS4 Predicted Functions.
Co-expressed Genes View RNY3's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View RNY3's ARCHS4 Predicted Functions.

Functional Associations

RNY3 has 110 functional associations with biological entities spanning 4 categories (functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.

Click the + buttons to view associations for RNY3 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CellMarker Gene-Cell Type Associations cell types associated with RNY3 gene from the CellMarker Gene-Cell Type Associations dataset.
ESCAPE Omics Signatures of Genes and Proteins for Stem Cells PubMedIDs of publications reporting gene signatures containing RNY3 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of RNY3 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of RNY3 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of RNY3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.