RNY4 Gene

HGNC Family Non-coding RNAs
Name RNA, Ro-associated Y4
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRNY4 is a member of the YRNA family—a group of small, non‐coding RNAs that have garnered attention for their emerging roles in cancer biology. Early work using retroviral‐induced leukemia models revealed that a range of non‐coding and coding transcripts are deregulated in T‐ and B‐cell leukemias, suggesting that altered non‐coding RNA expression, such as that of RNY4, might participate in oncogenic processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In parallel, studies in urinary bladder cancer patients have begun to explore YRNAs as promising diagnostic biomarkers, underscoring a potential clinical role for RNY4 in carcinogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAlthough several of the subsequent abstracts focus on the functions of protein‐coding messages—such as PARM‑1’s roles in cardiomyocyte differentiation, pulmonary arterial smooth muscle cell proliferation, adipocyte differentiation, and even urogenital development"}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "6"}]}, {"type": "t", "text": "—these investigations help to contextualize the complex regulatory networks present in pathological and developmental processes. They highlight how both coding and non‐coding RNAs can modulate key signaling pathways (such as BMP/Smad and AKT/FOXO3A) that govern cell differentiation, proliferation, and stress responses.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, while the precise mechanistic functions of RNY4 remain to be fully elucidated, the collected evidence indicates that its deregulation may be linked to oncogenic transformation and cancer progression. The recognition of YRNAs—including RNY4—as potential biomarkers in malignancies, together with insights gained from studies of other regulatory molecules in diverse cellular processes, underscores the need for further investigation into how these small non‐coding RNAs contribute to disease pathogenesis and normal cellular homeostasis.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Cyndia Charfi, Louis-Charles Levros, Elsy Edouard, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Characterization and identification of PARM-1 as a new potential oncogene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1476-4598-12-84"}], "href": "https://doi.org/10.1186/1476-4598-12-84"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23902727"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23902727"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yuri Tolkach, Anna Franziska Stahl, Eva-Maria Niehoff, et al. "}, {"type": "b", "children": [{"type": "t", "text": "YRNA expression predicts survival in bladder cancer patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12885-017-3746-y"}], "href": "https://doi.org/10.1186/s12885-017-3746-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29126388"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29126388"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Naohiko Nakanishi, Tomosaburo Takahashi, Takehiro Ogata, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PARM-1 promotes cardiomyogenic differentiation through regulating the BMP/Smad signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2012.10.078"}], "href": "https://doi.org/10.1016/j.bbrc.2012.10.078"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23123625"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23123625"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Zhen He, Teding Chang, Yu Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PARM1 Drives Smooth Muscle Cell Proliferation in Pulmonary Arterial Hypertension via AKT/FOXO3A Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms24076385"}], "href": "https://doi.org/10.3390/ijms24076385"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37047359"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37047359"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Sang-Houn Song, Yeon-Hee Hong, Shin-ichi Sasaki, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Prostatic androgen-repressed message-1 as a regulator of adipocyte differentiation in the mouse."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Tohoku J Exp Med (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1620/tjem.219.311"}], "href": "https://doi.org/10.1620/tjem.219.311"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19966531"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19966531"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Lars Wittler, Alina Hilger, Judith Proske, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Murine expression and mutation analyses of the prostate androgen-regulated mucin-like protein 1 (Parm1) gene, a candidate for human epispadias."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gene.2012.06.082"}], "href": "https://doi.org/10.1016/j.gene.2012.06.082"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22766399"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22766399"}]}]}]}
Synonyms HY4
NCBI Gene ID 6086
API
Download Associations
Predicted Functions View RNY4's ARCHS4 Predicted Functions.
Co-expressed Genes View RNY4's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View RNY4's ARCHS4 Predicted Functions.

Functional Associations

RNY4 has 163 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.

Click the + buttons to view associations for RNY4 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of RNY4 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of RNY4 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of RNY4 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of RNY4 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of RNY4 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of RNY4 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of RNY4 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of RNY4 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of RNY4 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of RNY4 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of RNY4 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.