| Name | ribosomal protein SA pseudogene 52 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRPSAP52 is a long non‐coding RNA originally identified as an antisense transcript to HMGA2 that plays a multifaceted role in tumorigenesis. In pituitary adenomas, RPSAP52 is markedly overexpressed and functions as a competing endogenous RNA (ceRNA) by sequestering microRNAs such as miR‐15a, miR‐15b, and miR‐16, which results in the upregulation of HMGA2 and HMGA1 proteins. This molecular mechanism enhances cell cycle progression by promoting the G1‐S transition and downregulating cell cycle inhibitors such as p21Waf1/CIP1 and growth arrest–related proteins like GAS8. In addition, in other neoplastic contexts it can interact with RNA binding proteins (e.g., IGF2BP2) to facilitate the recruitment of oncogenic mRNAs on polysomes and to modulate the balance between oncogenic and tumor suppressive pathways (e.g., LIN28B versus let‐7 miRNAs)."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn cancers beyond the pituitary gland, RPSAP52 continues to function as an important regulator of tumor cell proliferation and survival. In gastric cancer, the lncRNA acts as a ceRNA for miR-665, which in turn modulates STAT3 levels, leading to enhanced cell proliferation, cell cycle progression, and reduced apoptosis. Similarly, in tongue squamous cell carcinoma, overexpression of RPSAP52 suppresses miR-423-5p, thereby derepressing its target, the MYBL2 oncogene, which not only boosts cell growth but also triggers cytokine secretion, including IFN-γ, IL-1β, IL-6, IL-8, IL-10, and TGF-β."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its oncogenic roles, RPSAP52 has also been implicated in renal failure. In this context, the lncRNA is upregulated in the plasma of patients and has been shown to interact with miR-423-5p, influencing the expression of GSTM1. This modulation contributes to a reduction in apoptosis of human renal proximal tubular epithelial cells under hypoxic conditions, suggesting a protective axis via the RPSAP52/miR-423-5p/GSTM1 pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Daniela D'Angelo, Paula Mussnich, Romina Sepe, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RPSAP52 lncRNA is overexpressed in pituitary tumors and promotes cell proliferation by acting as miRNA sponge for HMGA proteins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Med (Berl) (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00109-019-01789-7"}], "href": "https://doi.org/10.1007/s00109-019-01789-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31076808"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31076808"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Cristina Oliveira-Mateos, Anaís Sánchez-Castillo, Marta Soler, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The transcribed pseudogene RPSAP52 enhances the oncofetal HMGA2-IGF2BP2-RAS axis through LIN28B-dependent and independent let-7 inhibition."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-019-11910-6"}], "href": "https://doi.org/10.1038/s41467-019-11910-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31484926"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31484926"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Daniela D'Angelo, Claudio Arra, Alfredo Fusco "}, {"type": "b", "children": [{"type": "t", "text": "RPSAP52 lncRNA Inhibits p21Waf1/CIP Expression by Interacting With the RNA Binding Protein HuR."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3727/096504019X15761465603129"}], "href": "https://doi.org/10.3727/096504019X15761465603129"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31831098"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31831098"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Chao He, Yuanyuan Liu, Jinhou Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA RPSAP52 promotes cell proliferation and inhibits cell apoptosis via modulating miR-665/STAT3 in gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2022.2054754"}], "href": "https://doi.org/10.1080/21655979.2022.2054754"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35322746"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35322746"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xiaozhen Wu, Zuode Gong, Long Ma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA RPSAP52 induced the development of tongue squamous cell carcinomas via miR-423-5p/MYBL2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.16442"}], "href": "https://doi.org/10.1111/jcmm.16442"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33787061"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33787061"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jie Chen, Yu Zheng, Liping Li "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA RPSAP52 regulates miR-423-5p/GSTM1 axis to suppress hypoxia-induced renal proximal tubular epithelial cell apoptosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arch Physiol Biochem (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/13813455.2020.1750657"}], "href": "https://doi.org/10.1080/13813455.2020.1750657"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32299250"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32299250"}]}]}]}
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| Synonyms | RPSA_17_1251 |
| NCBI Gene ID | 204010 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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RPSAP52 has 1,138 functional associations with biological entities spanning 6 categories (molecular profile, organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 27 datasets.
Click the + buttons to view associations for RPSAP52 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of RPSAP52 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of RPSAP52 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of RPSAP52 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of RPSAP52 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of RPSAP52 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of RPSAP52 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of RPSAP52 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| dbGAP Gene-Trait Associations | traits associated with RPSAP52 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at RPSAP52 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of RPSAP52 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of RPSAP52 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of RPSAP52 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of RPSAP52 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of RPSAP52 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of RPSAP52 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of RPSAP52 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GWAS Catalog SNP-Phenotype Associations | phenotypes associated with RPSAP52 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with RPSAP52 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with RPSAP52 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| HuBMAP ASCT+B Augmented with RNA-seq Coexpression | cell types associated with RPSAP52 gene from the HuBMAP ASCT+B Augmented with RNA-seq Coexpression dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of RPSAP52 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of RPSAP52 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of RPSAP52 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of RPSAP52 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of RPSAP52 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at RPSAP52 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of RPSAP52 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |