RTL5 Gene

Name retrotransposon Gag like 5
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nStudies in medulloblastoma models have revealed that piggyBac transposable element‐derived 5 (PGBD5) functions as a tumor mutator whose ectopic activation, especially in the context of aberrant Sonic Hedgehog (SHH) signaling, drives the transformation of cerebellar granule cell progenitors. PGBD5 promotes tumor development by inducing distinct DNA repair and neurodevelopmental factor expression, resulting in a cell state that is particularly susceptible to oncogenic alterations. This transposase‐like activity is implicated in fostering a genomic environment conducive to tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n \n \nIn addition, PGBD5-mediated genomic rearrangements in medulloblastoma are characterized by the presence of specific sequence breakpoints that recurrently disrupt known tumor suppressor genes and oncogenes. These structural DNA alterations provide a mechanistic explanation for the oncogenic transformation observed in childhood medulloblastomas, further supporting the role of PGBD5 as a mutator enzyme in these tumors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n \n \nFurther extending its oncogenic influence, recent investigations in glioma have demonstrated that elevated PGBD5 expression is closely linked with enhanced cell migration, invasion, and proliferation. In glioma tissue and cell models, silencing PGBD5 not only inhibited these malignant properties by triggering apoptosis and causing cell cycle arrest at the G2/M phase but also attenuated tumor growth in vivo, with evidence indicating that these effects are mediated via modulation of the peroxisome proliferator-activated receptor (PPAR) signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Makiko Yamada, Ross R Keller, Rodrigo Lopez Gutierrez, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Childhood cancer mutagenesis caused by transposase-derived PGBD5."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Adv (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/sciadv.adn4649"}], "href": "https://doi.org/10.1126/sciadv.adn4649"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38517960"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38517960"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Pengren Luo, Jinhong Yang, Lipeng Jian, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Knockdown of PGBD5 inhibits the malignant progression of glioma through upregulation of the PPAR pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Oncol (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ijo.2024.5643"}], "href": "https://doi.org/10.3892/ijo.2024.5643"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38577941"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38577941"}]}]}]}
NCBI Gene ID 340526
API
Download Associations
Predicted Functions View RTL5's ARCHS4 Predicted Functions.
Co-expressed Genes View RTL5's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View RTL5's ARCHS4 Predicted Functions.

Functional Associations

RTL5 has 1,906 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 17 datasets.

Click the + buttons to view associations for RTL5 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of RTL5 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with RTL5 gene from the CellMarker Gene-Cell Type Associations dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of RTL5 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 cellular components containing RTL5 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with RTL5 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with RTL5 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of RTL5 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of RTL5 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by RTL5 gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of RTL5 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of RTL5 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of RTL5 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of RTL5 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of RTL5 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of RTL5 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of RTL5 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with RTL5 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.