SANBR Gene

Name SANT and BTB domain regulator of CSR
Description Predicted to enable identical protein binding activity. Predicted to be involved in isotype switching. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nIn the cerebellar cortex, a CDC42 effector protein expressed exclusively in Bergmann glia (CDC42EP4) serves a critical role in anchoring septin hetero‐oligomers to perisynaptic membrane domains containing the glutamate transporter GLAST. This interaction ensures proper localization of GLAST in proximity to Purkinje cell dendritic spines, thereby optimizing glutamate buffering and clearance, and ultimately facilitating precise excitatory neurotransmission and motor coordination."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its role in glutamate clearance, CDC42EP4 is instrumental in maintaining the integrity of tripartite synapse configuration. By associating with septins and interacting indirectly with proteins such as MYH10 and N‐cadherin, CDC42EP4 helps retain Bergmann glial processes near active zones. Loss of CDC42EP4 leads to a recession of glial membranes from synaptic active zones and induces a compensatory increase in neuronal adhesion molecules, suggesting that proper CDC42EP4 function is essential for both structural and functional synaptic homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn contrast to the glial-specific roles of CDC42EP4, the related effector protein CEP4 is highly expressed in hippocampal neurons where it plays a pivotal role in dendritic morphogenesis. Experiments demonstrate that CEP4 promotes dendritic growth, with knockdown leading to impaired dendritic elaboration and overexpression enhancing dendrite complexity. These findings highlight CEP4 as a key positive regulator of neuronal dendrite development and, consequently, of the formation and maintenance of neuronal circuitry."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Natsumi Ageta-Ishihara, Maya Yamazaki, Kohtarou Konno, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A CDC42EP4/septin-based perisynaptic glial scaffold facilitates glutamate clearance."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncomms10090"}], "href": "https://doi.org/10.1038/ncomms10090"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26657011"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26657011"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Natsumi Ageta-Ishihara, Kohtarou Konno, Maya Yamazaki, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CDC42EP4, a perisynaptic scaffold protein in Bergmann glia, is required for glutamatergic tripartite synapse configuration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurochem Int (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuint.2018.01.003"}], "href": "https://doi.org/10.1016/j.neuint.2018.01.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29330091"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29330091"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Lei Hou, Lufeng Wang, Zhijie Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of dendrite growth by Cdc42 effector protein‑4 in hippocampal neurons "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "in vitro"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": "."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2022.12644"}], "href": "https://doi.org/10.3892/mmr.2022.12644"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35169866"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35169866"}]}]}]}
NCBI Gene ID 84542
API
Download Associations
Predicted Functions View SANBR's ARCHS4 Predicted Functions.
Co-expressed Genes View SANBR's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SANBR's ARCHS4 Predicted Functions.

Functional Associations

SANBR has 922 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.

Click the + buttons to view associations for SANBR from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SANBR gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of SANBR gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with SANBR protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving SANBR gene from the curated GO Biological Process Annotations2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of SANBR gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of SANBR gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with SANBR gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of SANBR gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of SANBR gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SANBR gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of SANBR gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of SANBR gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of SANBR gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of SANBR gene from the Sci-Plex Drug Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of SANBR protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of SANBR protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with SANBR protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.