SCARNA10 Gene

HGNC Family Non-coding RNAs
Name small Cajal body-specific RNA 10
Description Predicted to be involved in RNA processing. Located in Cajal body. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nLncRNA SCARNA10 has emerged as a key regulator in hepatic fibrogenesis. Notably, its expression is markedly up-regulated in both patient samples with advanced liver fibrosis and in mouse fibrosis models, and it promotes fibrosis by inducing hepatocyte apoptosis and activating hepatic stellate cells. Mechanistically, SCARNA10 exerts its pro-fibrotic effects by physically associating with the polycomb repressive complex 2 (PRC2), thereby inhibiting PRC2 recruitment to the promoters of extracellular matrix and TGFβ pathway genes, which leads to enhanced transcription of these genes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n \nIn addition to its role in liver fibrosis, circulating SCARNA10 has been explored as a potential diagnostic biomarker for hepatocellular carcinoma, suggesting its utility in the early detection or monitoring of liver cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n\nMoreover, SCARNA10 has been identified as a novel regulator of the tumor suppressor p53. It interacts directly with the DNA binding domain of p53 and the CREB-binding protein, promoting p53 acetylation and thereby enhancing p53-mediated transcriptional activation without altering overall p53 protein levels. Through this mechanism, SCARNA10 facilitates p53-dependent tumor suppression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Kun Zhang, Yawei Han, Zhimei Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SCARNA10, a nuclear-retained long non-coding RNA, promotes liver fibrosis and serves as a potential biomarker."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Theranostics (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7150/thno.32935"}], "href": "https://doi.org/10.7150/thno.32935"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31281502"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31281502"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yawei Han, Wenna Jiang, Yu Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Serum long non-coding RNA SCARNA10 serves as a potential diagnostic biomarker for hepatocellular carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12885-022-09530-3"}], "href": "https://doi.org/10.1186/s12885-022-09530-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35443674"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35443674"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yanxia Wu, Yanxi Sun, Binchu Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SCARNA10 regulates p53 acetylation-dependent transcriptional activity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2023.05.091"}], "href": "https://doi.org/10.1016/j.bbrc.2023.05.091"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37262951"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37262951"}]}]}]}
Synonyms U85
NCBI Gene ID 692148
API
Download Associations
Predicted Functions View SCARNA10's ARCHS4 Predicted Functions.
Co-expressed Genes View SCARNA10's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SCARNA10's ARCHS4 Predicted Functions.

Functional Associations

SCARNA10 has 717 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 19 datasets.

Click the + buttons to view associations for SCARNA10 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SCARNA10 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SCARNA10 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SCARNA10 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SCARNA10 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SCARNA10 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SCARNA10 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SCARNA10 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SCARNA10 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SCARNA10 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of SCARNA10 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SCARNA10 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SCARNA10 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SCARNA10 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SCARNA10 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of SCARNA10 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SCARNA10 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SCARNA10 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SCARNA10 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of SCARNA10 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.