| HGNC Family | Non-coding RNAs |
| Name | small Cajal body-specific RNA 12 |
| Description | This gene produces a small nuclear RNA that localizes specifically to Cajal bodies, which are conserved subnuclear organelles that are present in the nucleoplasm. This RNA is processed from an intron of the prohibitin 2 host gene. It includes both an H/ACA box and a C/D box, and is thought to guide the pseudouridylation of residue U46 in the U5 small nuclear RNA. [provided by RefSeq, Jun 2010] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSterile α motif and histidine–aspartate domain‐containing protein 1 (SAMHD1) is a deoxynucleoside triphosphate (dNTP) hydrolase that plays a vital role in cellular nucleotide homeostasis. By depleting the intracellular dNTP pool, SAMHD1 restricts retroviral replication—including that of HIV‐1—by limiting the substrates needed for reverse transcription. In addition, it is a key target of viral accessory proteins (e.g., Vpx), which counteract its restrictive function, and mutations in SAMHD1 have been implicated in autoimmune disorders such as Aicardi–Goutières syndrome as well as in certain cancers, highlighting its significance for genome maintenance and cellular defense."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its direct restriction of viral replication, SAMHD1 modulates innate immune pathways. It down‐regulates nuclear factor‐κB activation and type I interferon (IFN) induction in response to viral infections and inflammatory stimuli, thereby curbing potentially harmful overactivation of the immune response. Its enzymatic activity is finely tuned by allosteric effectors and by phosphorylation at key residues—such as threonine 592 in human and the homologous threonine 634 in mouse—with these modifications influencing its antiviral efficacy while only modestly affecting its dNTP hydrolase activity. This regulation is critical not only for antiviral defense but also for maintaining replication fidelity and controlling mutation rates during processes such as immunoglobulin gene hypermutation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn vivo mouse models further underscore the multifaceted role of SAMHD1 in antiviral immunity and immune regulation. SAMHD1 deficiency leads to elevated cellular dNTP levels, spontaneous IFN production, and a dysregulated immune profile that can enhance viral replication and promote inflammatory pathology. Moreover, altered SAMHD1 function has been linked to impaired adaptive immune responses and has potential therapeutic implications, as precision medicine approaches targeting nucleotide imbalances (e.g., in leukemia) are under investigation. Collectively, SAMHD1 is a critical regulator of nucleotide metabolism and immune signaling, orchestrating responses that maintain genomic stability while balancing antiviral defense and inflammatory control."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "13", "end_ref": "17"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Rebecca D Powell, Paul J Holland, Thomas Hollis, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Aicardi-Goutieres syndrome gene and HIV-1 restriction factor SAMHD1 is a dGTP-regulated deoxynucleotide triphosphohydrolase."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.C111.317628"}], "href": "https://doi.org/10.1074/jbc.C111.317628"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22069334"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22069334"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Rayk Behrendt, Tina Schumann, Alexander Gerbaulet, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mouse SAMHD1 has antiretroviral activity and suppresses a spontaneous cell-intrinsic antiviral response."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2013.07.037"}], "href": "https://doi.org/10.1016/j.celrep.2013.07.037"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23972988"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23972988"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jan Rehwinkel, Jonathan Maelfait, Anne Bridgeman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SAMHD1-dependent retroviral control and escape in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/emboj.2013.163"}], "href": "https://doi.org/10.1038/emboj.2013.163"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23872947"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23872947"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Shuliang Chen, Serena Bonifati, Zhihua Qin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SAMHD1 suppresses innate immune responses to viral infections and inflammatory stimuli by inhibiting the NF-κB and interferon pathways."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1801213115"}], "href": "https://doi.org/10.1073/pnas.1801213115"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29610295"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29610295"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Matilda Rentoft, Kristoffer Lindell, Phong Tran, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Heterozygous colon cancer-associated mutations of SAMHD1 have functional significance."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1519128113"}], "href": "https://doi.org/10.1073/pnas.1519128113"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27071091"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27071091"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jonathan Maelfait, Anne Bridgeman, Adel Benlahrech, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Restriction by SAMHD1 Limits cGAS/STING-Dependent Innate and Adaptive Immune Responses to HIV-1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2016.07.002"}], "href": "https://doi.org/10.1016/j.celrep.2016.07.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27477283"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27477283"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Sabine Wittmann, Rayk Behrendt, Kristin Eissmann, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Phosphorylation of murine SAMHD1 regulates its antiretroviral activity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Retrovirology (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12977-015-0229-6"}], "href": "https://doi.org/10.1186/s12977-015-0229-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26667483"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26667483"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Cristina Miazzi, Paola Ferraro, Giovanna Pontarin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Allosteric regulation of the human and mouse deoxyribonucleotide triphosphohydrolase sterile α-motif/histidine-aspartate domain-containing protein 1 (SAMHD1)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M114.571091"}], "href": "https://doi.org/10.1074/jbc.M114.571091"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24828500"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24828500"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Gregory Berger, Jocelyn Turpin, Stéphanie Cordeil, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional analysis of the relationship between Vpx and the restriction factor SAMHD1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M112.403816"}], "href": "https://doi.org/10.1074/jbc.M112.403816"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23076149"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23076149"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Feifei Wang, Corine St Gelais, Suresh de Silva, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "SAMHD1 enhances immunoglobulin hypermutation by promoting transversion mutation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1719771115"}], "href": "https://doi.org/10.1073/pnas.1719771115"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29669924"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29669924"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Nicolin Bloch, Sabine Gläsker, Poojitha Sitaram, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "SAMHD1 Promotes the Antiretroviral Adaptive Immune Response in Mice Exposed to Lipopolysaccharide."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.2001389"}], "href": "https://doi.org/10.4049/jimmunol.2001389"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34893529"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34893529"}]}]}]}
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| Synonyms | U89 |
| NCBI Gene ID | 677777 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SCARNA12 has 1,270 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 19 datasets.
Click the + buttons to view associations for SCARNA12 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SCARNA12 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SCARNA12 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SCARNA12 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SCARNA12 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SCARNA12 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SCARNA12 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SCARNA12 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing SCARNA12 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of SCARNA12 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SCARNA12 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of SCARNA12 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SCARNA12 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SCARNA12 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SCARNA12 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of SCARNA12 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of SCARNA12 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SCARNA12 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SCARNA12 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of SCARNA12 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |