SCARNA13 Gene

HGNC Family Non-coding RNAs
Name small Cajal body-specific RNA 13
Description Predicted to be involved in RNA processing. Located in Cajal body. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nMutations in the dyskerin protein, particularly within its N-terminal extension (NTE) domain, not only reduce TERC levels but also disrupt the normal processing of scaRNA13. In stem cells from dyskeratosis congenita patients harboring the del37L mutation, scaRNA13 transcripts exhibit abnormal 3′ extensions, indicating that proper 3′ end definition is compromised by these mutations. This finding underscores an essential role for dyskerin in ensuring accurate maturation of scaRNA13, a member of the small Cajal body-specific RNAs critical for RNA modification processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n\nIn addition, the study demonstrates that impairments in the scaRNA13 biogenesis associated with dyskerin NTE mutations can be counteracted. Both genome-editing repair of the del37L mutation and inhibition of the polymerase PAPD5—whose activity opposes the exoribonuclease PARN—restore normal scaRNA13 processing. These results reveal that the proper interplay between dyskerin and the PARN/PAPD5 axis is indispensable for scaRNA13 maturation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n\nStructural insights further bolster these conclusions; the cryo-EM model of human telomerase shows that the dyskerin NTE domain makes direct contact with terminal residues of the associated RNA, emphasizing its role in defining the 3′ end of scaRNA13. This mechanistic connection not only broadens our understanding of non-coding RNA regulation in telomere-associated diseases but also highlights potential therapeutic avenues for disorders linked to dyskerin dysfunction."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Neha Nagpal, Albert K Tai, Jayakrishnan Nandakumar, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Domain specific mutations in dyskerin disrupt 3' end processing of scaRNA13."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkac706"}], "href": "https://doi.org/10.1093/nar/gkac706"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36018809"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36018809"}]}]}]}
Synonyms U93
NCBI Gene ID 677768
API
Download Associations
Predicted Functions View SCARNA13's ARCHS4 Predicted Functions.
Co-expressed Genes View SCARNA13's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SCARNA13's ARCHS4 Predicted Functions.

Functional Associations

SCARNA13 has 1,974 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 18 datasets.

Click the + buttons to view associations for SCARNA13 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of SCARNA13 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SCARNA13 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SCARNA13 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SCARNA13 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SCARNA13 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SCARNA13 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SCARNA13 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing SCARNA13 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of SCARNA13 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SCARNA13 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of SCARNA13 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SCARNA13 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SCARNA13 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SCARNA13 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SCARNA13 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of SCARNA13 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SCARNA13 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SCARNA13 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.