SCARNA14 Gene

HGNC Family Non-coding RNAs
Name small Cajal body-specific RNA 14
Description Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nA careful review of the provided abstracts reveals no mention or functional insight regarding SCARNA14. Instead, these studies focus on a group of transcriptional regulators in the BTB/POZ zinc finger family—proteins known variously as ZBTB32, ROG, PLZP, or Tzfp—that control many aspects of immune cell behavior. For example, one study demonstrates that these factors are induced by proinflammatory cytokines, enabling natural killer cells to undergo a robust proliferative burst in response to viral infection."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther reports extend these findings in the immune compartment by showing that these transcriptional repressors modulate the balance between effector and memory responses. For instance, ZBTB32 is critical for tempering CD8⁺ T cell expansion and controlling the magnitude and duration of antibody recall responses by memory B cells, while ROG (Repressor of GATA) functions to attenuate T cell receptor signaling and cytokine production via suppression of NF-κB activity."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to their immune-regulatory roles, related studies examine how members of this protein family influence other biological systems. For example, Tzfp—a closely related repressor—has been implicated in testicular gene regulation, where its loss perturbs androgen receptor signaling and alters the expression of genes involved in spermatogenesis. Moreover, the interplay of these factors with co-regulators such as Blimp-1 highlights a conserved mechanism for integrating inflammatory signals and controlling cell cycle progression across multiple cell types. Thus, although SCARNA14 itself is not discussed in any of these reports, the collective data underscore a central network of transcriptional repressors that orchestrate immune homeostasis and cellular differentiation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "14"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Miyuki Omori, Masakatsu Yamashita, Masamichi Inami, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CD8 T cell-specific downregulation of histone hyperacetylation and gene activation of the IL-4 gene locus by ROG, repressor of GATA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Immunity (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s1074-7613(03)00210-3"}], "href": "https://doi.org/10.1016/s1074-7613(03"}, {"type": "t", "text": "00210-3) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12932361"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12932361"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Shi-Chuen Miaw, Bok Yun Kang, Ian Alexander White, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A repressor of GATA-mediated negative feedback mechanism of T cell activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.172.1.170"}], "href": "https://doi.org/10.4049/jimmunol.172.1.170"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14688323"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14688323"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Francesco Piazza, José A Costoya, Taha Merghoub, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Disruption of PLZP in mice leads to increased T-lymphocyte proliferation, cytokine production, and altered hematopoietic stem cell homeostasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.24.23.10456-10469.2004"}], "href": "https://doi.org/10.1128/MCB.24.23.10456-10469.2004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15542853"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15542853"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Bok Yun Kang, Shi-Chuen Miaw, I-Cheng Ho "}, {"type": "b", "children": [{"type": "t", "text": "ROG negatively regulates T-cell activation but is dispensable for Th-cell differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.25.2.554-562.2005"}], "href": "https://doi.org/10.1128/MCB.25.2.554-562.2005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15632058"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15632058"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Kiyoshi Hirahara, Masakatsu Yamashita, Chiaki Iwamura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Repressor of GATA regulates TH2-driven allergic airway inflammation and airway hyperresponsiveness."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Allergy Clin Immunol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jaci.2008.06.004"}], "href": "https://doi.org/10.1016/j.jaci.2008.06.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18620745"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18620745"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Chun-Chi Chou, Yuan-Chao Lou, Tang K Tang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structure and DNA binding characteristics of the three-Cys(2)His(2) domain of mouse testis zinc finger protein."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proteins (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/prot.22732"}], "href": "https://doi.org/10.1002/prot.22732"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20544958"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20544958"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Yoshiro Hirasaki, Chiaki Iwamura, Masakatsu Yamashita, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Repressor of GATA negatively regulates murine contact hypersensitivity through the inhibition of type-2 allergic responses."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Immunol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.clim.2011.02.009"}], "href": "https://doi.org/10.1016/j.clim.2011.02.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21398189"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21398189"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Yuan-Sheng Zang, Zheng Fang, Yong-An Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Repressor of GATA-3 can negatively regulate the expression of T cell cytokines through modulation on inducible costimulator."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Chin Med J (Engl) (2012)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22884151"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22884151"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Line M Nordstrand, Kari Furu, Jonas Paulsen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gks839"}], "href": "https://doi.org/10.1093/nar/gks839"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22965116"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22965116"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Kari Furu, Arne Klungland "}, {"type": "b", "children": [{"type": "t", "text": "Tzfp represses the androgen receptor in mouse testis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0062314"}], "href": "https://doi.org/10.1371/journal.pone.0062314"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23634227"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23634227"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Aimee M Beaulieu, Carolyn L Zawislak, Toshinori Nakayama, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The transcription factor Zbtb32 controls the proliferative burst of virus-specific natural killer cells responding to infection."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Immunol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ni.2876"}], "href": "https://doi.org/10.1038/ni.2876"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24747678"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24747678"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Jeffrey D Price, Chie Hotta-Iwamura, Yongge Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DCIR2+ cDC2 DCs and Zbtb32 Restore CD4+ T-Cell Tolerance and Inhibit Diabetes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Diabetes (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2337/db14-1880"}], "href": "https://doi.org/10.2337/db14-1880"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26070317"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26070317"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Arijita Jash, Yinan Wang, Florian J Weisel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ZBTB32 Restricts the Duration of Memory B Cell Recall Responses."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1600882"}], "href": "https://doi.org/10.4049/jimmunol.1600882"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27357154"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27357154"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Hyun Mu Shin, Varun N Kapoor, Gwanghun Kim, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transient expression of ZBTB32 in anti-viral CD8+ T cells limits the magnitude of the effector response and the generation of memory."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Pathog (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.ppat.1006544"}], "href": "https://doi.org/10.1371/journal.ppat.1006544"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28827827"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28827827"}]}]}]}
Synonyms U100
NCBI Gene ID 692149
API
Download Associations
Predicted Functions View SCARNA14's ARCHS4 Predicted Functions.
Co-expressed Genes View SCARNA14's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SCARNA14's ARCHS4 Predicted Functions.

Functional Associations

SCARNA14 has 267 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.

Click the + buttons to view associations for SCARNA14 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SCARNA14 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SCARNA14 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SCARNA14 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SCARNA14 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SCARNA14 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SCARNA14 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SCARNA14 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SCARNA14 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SCARNA14 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SCARNA14 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SCARNA14 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SCARNA14 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SCARNA14 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SCARNA14 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of SCARNA14 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.