SCARNA7 Gene

HGNC Family Non-coding RNAs
Name small Cajal body-specific RNA 7
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
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In parallel, FOXC2 plays a critical role in the maturation and remodeling of the lymphatic vasculature by cooperating with other transcription factors (for example, NFATc1) to regulate valve formation, vessel stability, and proper lymphangiogenesis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "2", "end_ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its roles in cancer and lymphatic biology, FOXC2 (and its paralog FOXC1) is pivotal in arterial specification and early cardiovascular development. In the developing embryo, these factors operate upstream of Notch signaling to promote arterial identity and guide processes such as cardiac outflow tract septation and ventricular morphogenesis. They also influence the development of other tissues—including the kidney (by modulating podocyte function and epithelial redifferentiation), adipose tissue (regulating adipogenesis, energy metabolism, and even the vascular patterning of fat), skeletal elements (enhancing osteoblast proliferation and differentiation via beta‐catenin and integrin pathways), and muscle (where FOXC2 sustains satellite cell proliferation while preventing premature differentiation)."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "13"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional studies report that FOXC2 regulates metabolic functions in adipocytes and preadipocytes—modulating hormonal responsiveness via PI3K, MAPK, and cAMP–PKA pathways—to block adipogenesis and promote energy expenditure, thereby counteracting obesity and insulin resistance. In the context of tumor biology, FOXC2 also underpins angiogenesis by up‐regulating factors such as CXCR4, integrins, VEGF, and matrix metalloproteases, which in turn support neovascularization and tumor growth. Complementary findings in various conditional knockout models further emphasize that appropriate FOXC2 expression is essential for the integrity of vascular structures (including venous valves) and for maintaining tissue homeostasis across the kidney, bone, heart, and even the ocular surface."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "14", "end_ref": "29"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nCollectively, these studies evidence that FOXC2 functions as a master regulator in development and disease by controlling gene networks that modulate cell migration, differentiation, survival, and metabolic state. By orchestrating signaling pathways (involving Notch, Wnt, BMP, and various growth factors) in a cell type– and tissue-specific manner, FOXC2—and by extension its related forkhead family members—ensures normal morphogenesis in organs such as the heart, kidney, adipose tissue, skeletal system, and vasculature, while aberrant FOXC2 expression contributes to pathological states including cancer metastasis, vascular malformations, and metabolic disorders."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "30", "end_ref": "41"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Sendurai A Mani, Jing Yang, Mary Brooks, et al. 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Synonyms U90
NCBI Gene ID 677767
API
Download Associations
Predicted Functions View SCARNA7's ARCHS4 Predicted Functions.
Co-expressed Genes View SCARNA7's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SCARNA7's ARCHS4 Predicted Functions.

Functional Associations

SCARNA7 has 652 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.

Click the + buttons to view associations for SCARNA7 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SCARNA7 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SCARNA7 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SCARNA7 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SCARNA7 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SCARNA7 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SCARNA7 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of SCARNA7 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SCARNA7 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of SCARNA7 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SCARNA7 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SCARNA7 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SCARNA7 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SCARNA7 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SCARNA7 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SCARNA7 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SCARNA7 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of SCARNA7 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.