SCHLAP1 Gene

HGNC Family Non-coding RNAs
Name SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding)
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSChLAP1 is a long noncoding RNA initially characterized in prostate cancer, where its overexpression is strongly associated with aggressive tumor behavior. In these tumors, high SChLAP1 levels independently predict poor clinical outcomes—including increased invasiveness, metastasis, biochemical recurrence, and cancer‐specific mortality—and serve as a robust tissue‐based prognostic biomarker in patient cohorts."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMechanistically, SChLAP1 has been implicated in modulating key oncogenic pathways. Early studies demonstrated that it contributes to tumor progression by inhibiting the genome‐wide localization and regulatory functions of the SWI/SNF chromatin‐remodeling complex, although subsequent work suggests that its activity may not involve global SWI/SNF depletion but rather a more context‐dependent mechanism. In addition, SChLAP1 regulates microRNA networks, for instance by repressing miR‑198 to influence MAPK1 signaling and, via direct interaction with epigenetic modifiers like EZH2, by promoting H3K27me3-mediated silencing of tumor-suppressive miRNAs. These multifaceted interactions enhance cancer cell proliferation, migration, and invasiveness."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "7"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond prostate cancer, SChLAP1 exhibits oncogenic activities in several other malignancies. In non‐small cell lung cancer, for example, it promotes immune evasion by interacting with AUF1 to stabilize PD‑L1 mRNA, thereby dampening CD8+ T cell responses. In triple‐negative breast cancer, SChLAP1 functions as a sponge for miR‑524‑5p to modulate HMGA2 expression and enhance tumor cell viability and invasion. Similar oncogenic roles have been proposed in bladder and broader breast cancer contexts, supporting its candidacy as a potential biomarker and therapeutic target across multiple cancer types."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "11"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "John R Prensner, Matthew K Iyer, Anirban Sahu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng.2771"}], "href": "https://doi.org/10.1038/ng.2771"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24076601"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24076601"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "John R Prensner, Shuang Zhao, Nicholas Erho, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RNA biomarkers associated with metastatic progression in prostate cancer: a multi-institutional high-throughput analysis of SChLAP1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Lancet Oncol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/S1470-2045(14)71113-1"}], "href": "https://doi.org/10.1016/S1470-2045(14"}, {"type": "t", "text": "71113-1) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25456366"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25456366"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Rohit Mehra, Aaron M Udager, Thomas U Ahearn, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Overexpression of the Long Non-coding RNA SChLAP1 Independently Predicts Lethal Prostate Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Urol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.eururo.2015.12.003"}], "href": "https://doi.org/10.1016/j.eururo.2015.12.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26724257"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26724257"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Susanne G Kidd, Kristina T Carm, Mari Bogaard, et al. "}, {"type": "b", "children": [{"type": "t", "text": "High expression of SCHLAP1 in primary prostate cancer is an independent predictor of biochemical recurrence, despite substantial heterogeneity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neoplasia (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neo.2021.05.012"}], "href": "https://doi.org/10.1016/j.neo.2021.05.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34107378"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34107378"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Ye Li, Haihong Luo, Nan Xiao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Noncoding RNA SChLAP1 Accelerates the Proliferation and Metastasis of Prostate Cancer via Targeting miR-198 and Promoting the MAPK1 Pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Res (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3727/096504017X14944585873631"}], "href": "https://doi.org/10.3727/096504017X14944585873631"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28492138"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28492138"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jesse R Raab, Keriayn N Smith, Camarie C Spear, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SWI/SNF remains localized to chromatin in the presence of SCHLAP1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41588-018-0272-z"}], "href": "https://doi.org/10.1038/s41588-018-0272-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30510238"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30510238"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Kai Huang, Yuxin Tang "}, {"type": "b", "children": [{"type": "t", "text": "SChLAP1 promotes prostate cancer development through interacting with EZH2 to mediate promoter methylation modification of multiple miRNAs of chromosome 5 with a DNMT3a-feedback loop."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-021-03455-8"}], "href": "https://doi.org/10.1038/s41419-021-03455-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33589600"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33589600"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Jianjun Zhang, Zhenfeng Shi, Yukui Nan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inhibiting malignant phenotypes of the bladder cancer cells by silencing long noncoding RNA SChLAP1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int Urol Nephrol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11255-016-1230-2"}], "href": "https://doi.org/10.1007/s11255-016-1230-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26861061"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26861061"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Zhonghai Du, Shuxian Niu, Juan Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SChLAP1 contributes to non-small cell lung cancer cell progression and immune evasion through regulating the AUF1/PD-L1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Autoimmunity (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/08916934.2021.1913582"}], "href": "https://doi.org/10.1080/08916934.2021.1913582"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33904361"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33904361"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Xiangdong Bai, Shengxiao Zhang, Jun Qiao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non‑coding RNA SChLAP1 regulates the proliferation of triple negative breast cancer cells via the miR‑524‑5p/HMGA2 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2021.12085"}], "href": "https://doi.org/10.3892/mmr.2021.12085"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33846810"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33846810"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Sixian Cheng, Qingquan Zhao, Zhengrong Zheng "}, {"type": "b", "children": [{"type": "t", "text": "Expression and clinical significance of lncRNA-SChLAP1 in breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J BUON (2021)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34268927"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34268927"}]}]}]}
Synonyms PCAT11, PCAT114, LINC00913
NCBI Gene ID 101669767
API
Download Associations
Predicted Functions View SCHLAP1's ARCHS4 Predicted Functions.
Co-expressed Genes View SCHLAP1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SCHLAP1's ARCHS4 Predicted Functions.

Functional Associations

SCHLAP1 has 14 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue) extracted from 3 datasets.

Click the + buttons to view associations for SCHLAP1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CTD Gene-Disease Associations diseases associated with SCHLAP1 gene/protein from the curated CTD Gene-Disease Associations dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with SCHLAP1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with SCHLAP1 gene from the HuBMAP Azimuth Cell Type Annotations dataset.