SELENOM Gene

Name selenoprotein M
Description The protein encoded by this gene belongs to the selenoprotein M/SEP15 family. The exact function of this protein is not known. It is localized in the perinuclear region, is highly expressed in the brain, and may be involved in neurodegenerative disorders. Transgenic mice with targeted deletion of this gene exhibit increased weight gain, suggesting a role for this gene in the regulation of body weight and energy metabolism. This protein is a selenoprotein, containing the rare amino acid selenocysteine (Sec). Sec is encoded by the UGA codon, which normally signals translation termination. The 3' UTRs of selenoprotein mRNAs contain a conserved stem-loop structure, designated the Sec insertion sequence (SECIS) element, that is necessary for the recognition of UGA as a Sec codon, rather than as a stop signal. [provided by RefSeq, Dec 2016]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSelenoprotein M (SELM) is an endoplasmic reticulum‐resident protein distinguished by a conserved redox motif (CXXU) that implies thiol disulfide oxidoreductase activity, thereby contributing to the regulation of redox homeostasis and calcium responses. In the human brain, where SELM is highly expressed, its interaction with galectin‐1 has been identified through yeast two-hybrid screening and verified by complementary biochemical methods, suggesting a role in neuroprotection and the prevention of neurodegeneration."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its neurological functions, SELM has emerged as an important player in cancer biology. Studies in hepatocellular carcinoma (HCC) have demonstrated that SELM is overexpressed in both cell lines and patient tissues, with its levels gradually increasing in parallel with escalating malignancy grades—indicating its potential use as a biomarker for HCC."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In addition, investigations involving structure–function analyses and molecular dynamics modeling in hepatoma cell lines further support SELM’s involvement in HCC, opening avenues for structure-based drug design."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nSELM’s oncogenic role extends to renal cell carcinoma (RCC), where its upregulation correlates with poor prognosis and enhanced cellular proliferation, migration, and invasion—effects partly ascribed to the activation of the PI3K/Akt/mTOR pathway and the consequent upregulation of matrix metallopeptidases MMP2 and MMP9."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Moreover, proteomic studies in cancer cell lines, including fibrosarcoma and breast adenocarcinoma models, have revealed interactions between SELM and cytoplasmic actin isoforms, while exposure to selenium compounds such as sodium selenite and methylseleninic acid differentially modulates SELM expression, underscoring its therapeutic and prognostic potential."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xifeng Qiao, Jing Tian, Ping Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Galectin-1 is an interactive protein of selenoprotein M in the brain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms141122233"}], "href": "https://doi.org/10.3390/ijms141122233"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24284396"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24284396"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "E Guerriero, M Accardo, F Capone, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Assessment of the Selenoprotein M (SELM) over-expression on human hepatocellular carcinoma tissues by immunohistochemistry."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Histochem (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4081/ejh.2014.2433"}], "href": "https://doi.org/10.4081/ejh.2014.2433"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25578973"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25578973"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Stefano Guariniello, Giovanni Colonna, Raffaele Raucci, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structure-function relationship and evolutionary history of the human selenoprotein M (SelM) found over-expressed in hepatocellular carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbapap.2013.12.001"}], "href": "https://doi.org/10.1016/j.bbapap.2013.12.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24332979"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24332979"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Hao Jiang, Qian-Qian Shi, Li-Yuan Ge, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Selenoprotein M stimulates the proliferative and metastatic capacities of renal cell carcinoma through activating the PI3K/AKT/mTOR pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Med (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/cam4.2403"}], "href": "https://doi.org/10.1002/cam4.2403"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31274247"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31274247"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "E G Varlamova, M V Goltyaev, E E Fesenko "}, {"type": "b", "children": [{"type": "t", "text": "Protein Partners of Selenoprotein SELM and the Role of Selenium Compounds in Regulation of Its Expression in Human Cancer Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dokl Biochem Biophys (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1134/S1607672919050065"}], "href": "https://doi.org/10.1134/S1607672919050065"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31768845"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31768845"}]}]}]}
NCBI Gene ID 140606
API
Download Associations
Predicted Functions View SELENOM's ARCHS4 Predicted Functions.
Co-expressed Genes View SELENOM's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SELENOM's ARCHS4 Predicted Functions.

Functional Associations

SELENOM has 2,628 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 29 datasets.

Click the + buttons to view associations for SELENOM from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Proteomics Cell lines associated with SELENOM protein from the CCLE Cell Line Proteomics dataset.
CellMarker Gene-Cell Type Associations cell types associated with SELENOM gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of SELENOM gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing SELENOM protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with SELENOM protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of SELENOM protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by SELENOM gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with SELENOM gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with SELENOM gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with SELENOM gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with SELENOM gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
GO Cellular Component Annotations 2023 cellular components containing SELENOM protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing SELENOM protein from the curated GO Cellular Component Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of SELENOM gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of SELENOM gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of SELENOM gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with SELENOM gene from the HuBMAP Azimuth Cell Type Annotations dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by SELENOM gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of SELENOM gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of SELENOM gene from the NIBR DRUG-seq U2OS MoA Box dataset.
PFOCR Pathway Figure Associations 2023 pathways involving SELENOM protein from the PFOCR Pathway Figure Associations 2023 dataset.
PFOCR Pathway Figure Associations 2024 pathways involving SELENOM protein from the Wikipathways PFOCR 2024 dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SELENOM gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of SELENOM gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of SELENOM gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of SELENOM protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of SELENOM protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with SELENOM protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving SELENOM protein from the WikiPathways Pathways 2024 dataset.