SEM1 Gene

Name SEM1 26S proteasome subunit
Description The product of this gene has been localized within the split hand/split foot malformation locus SHFM1 at chromosome 7. It has been proposed to be a candidate gene for the autosomal dominant form of the heterogeneous limb developmental disorder split hand/split foot malformation type 1. In addition, it has been shown to directly interact with BRCA2. It also may play a role in the completion of the cell cycle. [provided by RefSeq, Jul 2008]
Summary
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In addition, SEM1 enhances the activities of other repair proteins such as RAD52 by modulating their oligomeric states and DNA binding properties, thereby promoting efficient single‐strand annealing and break-induced replication."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its central role in DNA repair, SEM1 is an integral component of the 26S proteasome complex. Here it contributes to proteasome assembly and function by interacting directly with regulatory subunits such as RPN3 and RPN7. This association is critical not only for the recruitment of polyubiquitinated substrates (including key tumor suppressors like p53) for targeted degradation but also for the regulation of mRNA export and RNA processing via its participation in multisubunit complexes (for example, those involved in splicing, transcription regulation, and mRNA nuclear export). Its versatility as a polyanionic adhesive allows SEM1 to stabilize protein assemblies by preventing nonproductive interactions, thereby supporting diverse cellular functions."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "11"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAberrant expression or mutation of SEM1 has significant clinical and oncogenic implications. In many cancer types—including breast, cervical, and glioma—altered SEM1 levels have been linked to defective homologous recombination repair, genomic instability, and chemoresistance. Notably, reduced or dysfunctional SEM1 impairs BRCA2-dependent repair processes, while overexpression has been associated with tumor progression and poor clinical outcomes. Moreover, SEM1’s regulation of proteasomal activity can influence the balance between error‐free and error‐prone double-strand break repair pathways, further impacting cancer development and therapeutic responses. Comparative structural analyses suggest that slight variations in SEM1’s disordered regions may underlie its divergent binding properties and functional outcomes, emphasizing its critical role in cellular homeostasis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "12", "end_ref": "17"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Colleen N Kristensen, Karin M Bystol, Boran Li, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "DSS1 and ssDNA regulate oligomerization of BRCA2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkaa555"}], "href": "https://doi.org/10.1093/nar/gkaa555"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32609828"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32609828"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Suresh Alagar, Ranjit Prasad Bahadur "}, {"type": "b", "children": [{"type": "t", "text": "DSS1 allosterically regulates the conformation of the tower domain of BRCA2 that has dsDNA binding specificity for homologous recombination."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Biol Macromol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ijbiomac.2020.09.230"}], "href": "https://doi.org/10.1016/j.ijbiomac.2020.09.230"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33011260"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33011260"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Miyoung Lee, David Shorthouse, Robert Mahen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cancer-causing BRCA2 missense mutations disrupt an intracellular protein assembly mechanism to disable genome maintenance."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkab308"}], "href": "https://doi.org/10.1093/nar/gkab308"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33978741"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33978741"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Yuxin Huang, Wenjing Li, Tzeh Foo, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Identification of a specific motif of the DSS1 protein required for proteasome interaction and p53 protein degradation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Biol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jmb.2008.08.044"}], "href": "https://doi.org/10.1016/j.jmb.2008.08.044"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18775730"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18775730"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Birthe B Kragelund, Signe M Schenstrøm, Caio A Rebula, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "DSS1 promoter hypomethylation and overexpression predict poor prognosis in melanoma and squamous cell carcinoma patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Pathol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.humpath.2016.10.018"}], "href": "https://doi.org/10.1016/j.humpath.2016.10.018"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27825810"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27825810"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Mario Venza, Teresa Catalano, Maria Visalli, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of the DSS1 c.143G>A polymorphism with skin squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Invest Dermatol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/jid.2010.21"}], "href": "https://doi.org/10.1038/jid.2010.21"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20220765"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20220765"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Yen-Ying Ma, Hao Lin, Fang-Mei Chang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of the deleted in split hand/split foot 1 protein as a novel biomarker for human cervical cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Carcinogenesis (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/carcin/bgs279"}], "href": "https://doi.org/10.1093/carcin/bgs279"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23024267"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23024267"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Andri Rezano, Kazuhiko Kuwahara, Mutsuko Yamamoto-Ibusuki, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Breast cancers with high DSS1 expression that potentially maintains BRCA2 stability have poor prognosis in the relapse-free survival."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1471-2407-13-562"}], "href": "https://doi.org/10.1186/1471-2407-13-562"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24289229"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24289229"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Naomi Gondo, Yasuhiro Sakai, Zhenhuan Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Increased chemosensitivity via BRCA2-independent DNA damage in DSS1- and PCID2-depleted breast carcinomas."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Lab Invest (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41374-021-00613-6"}], "href": "https://doi.org/10.1038/s41374-021-00613-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34031538"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34031538"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Chuntao Li, Bo Chen, Junxia Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SEM1 promotes tumor progression of glioblastoma via activating the akt signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Lett (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.canlet.2023.216368"}], "href": "https://doi.org/10.1016/j.canlet.2023.216368"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37652287"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37652287"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Sarah F Ruidiaz, Jesper E Dreier, Rasmus Hartmann-Petersen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The disordered PCI-binding human proteins CSNAP and DSS1 have diverged in structure and function."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Protein Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/pro.4159"}], "href": "https://doi.org/10.1002/pro.4159"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34272906"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34272906"}]}]}]}
NCBI Gene ID 7979
API
Download Associations
Predicted Functions View SEM1's ARCHS4 Predicted Functions.
Co-expressed Genes View SEM1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SEM1's ARCHS4 Predicted Functions.

Functional Associations

SEM1 has 2,752 functional associations with biological entities spanning 5 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 29 datasets.

Click the + buttons to view associations for SEM1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SEM1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of SEM1 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CellMarker Gene-Cell Type Associations cell types associated with SEM1 gene from the CellMarker Gene-Cell Type Associations dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing SEM1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with SEM1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with SEM1 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with SEM1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2025 biological processes involving SEM1 gene from the curated GO Biological Process Annotations2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of SEM1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of SEM1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with SEM1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of SEM1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of SEM1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
KEGG Pathways 2026 pathways involving SEM1 protein from the KEGG Pathways 2026 dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of SEM1 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of SEM1 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of SEM1 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Reactome Pathways 2024 pathways involving SEM1 protein from the Reactome Pathways 2024 dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SEM1 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SEM1 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SEM1 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of SEM1 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of SEM1 gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of SEM1 gene from the Sci-Plex Drug Perturbation Signatures dataset.
Tahoe Therapeutics Tahoe 100M Perturbation Atlas drug perturbations changing expression of SEM1 gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of SEM1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of SEM1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with SEM1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving SEM1 protein from the WikiPathways Pathways 2024 dataset.