| Name | SH3PXD2A antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent integrative analyses of publicly available datasets have identified the long non‐coding RNA SH3PXD2A‐AS1 as a novel molecule associated with disease progression in distinct pathological contexts. In colorectal cancer (CRC), aberrant expression of SH3PXD2A‐AS1 correlates with aggressive tumor behavior and progression, suggesting that this lncRNA may contribute to CRC metastasis and serve as a potential novel biomarker or therapeutic target."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn an independent study investigating placental dysfunction in early‐onset severe preeclampsia, elevated levels of SH3PXD2A‐AS1 were found to be positively correlated with clinical severity. Mechanistic investigations revealed that SH3PXD2A‐AS1 impairs trophoblast invasion and migration by recruiting the CCCTC-binding factor (CTCF) to the promoters of SH3PXD2A and CCR7, thereby repressing their transcription. This inhibitory action may contribute to insufficient placentation and the pathogenesis of preeclampsia."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Zhonghua Ma, Peng Peng, Jing Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Non-Coding RNA SH3PXD2A-AS1 Promotes Cell Progression Partly Through Epigenetic Silencing P57 and KLF2 in Colorectal Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Physiol Biochem (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000489589"}], "href": "https://doi.org/10.1159/000489589"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29734178"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29734178"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Qian Chen, Sijia Jiang, Haihua Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of lncRNA SH3PXD2A-AS1 with preeclampsia and its function in invasion and migration of placental trophoblast cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-020-02796-0"}], "href": "https://doi.org/10.1038/s41419-020-02796-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32719429"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32719429"}]}]}]}
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| NCBI Gene ID | 100505839 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SH3PXD2A-AS1 has 168 functional associations with biological entities spanning 3 categories (chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.
Click the + buttons to view associations for SH3PXD2A-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SH3PXD2A-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SH3PXD2A-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SH3PXD2A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of SH3PXD2A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SH3PXD2A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of SH3PXD2A-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SH3PXD2A-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SH3PXD2A-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |