SHFL Gene

Name shiftless antiviral inhibitor of ribosomal frameshifting
Description This gene is an interferon stimulated gene (ISG) that inhibits viral replication. The encoded protein binds nucleic acids and inhibits programmed -1 ribosomal frameshifting required for translation by many RNA viruses. Viruses inhibited by the protein include Zika virus, dengue virus and the coronaviruses, SARS-CoV and SARS-CoV2. [provided by RefSeq, Aug 2021]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nC19orf66, also known as Shiftless (SHFL), is an interferon‐stimulated gene that has emerged as a broad‐spectrum antiviral effector. Its expression is induced in response to interferon signaling during infection by diverse pathogens, including dengue virus, Zika virus, hepatitis C virus, Japanese encephalitis virus, hepatitis B virus, and human immunodeficiency virus, as well as during infection by herpesviruses such as Kaposi’s sarcoma‐associated herpesvirus. In these studies, upregulation of SHFL was associated with a marked reduction in viral replication, underscoring its clinical relevance in antiviral defense mechanisms."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMechanistically, SHFL interferes with viral gene expression through multiple pathways. In one mode of action, SHFL impairs viral protein synthesis by binding viral RNAs and interacting with host mRNA‐binding proteins, thereby inhibiting the translation process required for virus propagation. Additionally, SHFL has been shown to directly reduce the efficiency of programmed ribosomal frameshifting and stop‐codon readthrough events—critical steps for the proper expression of viral polyproteins in pathogens such as HIV-1, coronaviruses, and cardioviruses. In the case of Japanese encephalitis virus, SHFL inhibits the production of the NS1′ protein through disruption of the -1 ribosomal frameshift mechanism."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFurther expanding its antiviral repertoire, SHFL also modulates host cell processes. During Kaposi’s sarcoma‐associated herpesvirus infection, SHFL targets key early viral regulatory proteins and alters RNA–protein dynamics by affecting cytoplasmic RNA granule formation, notably triggering the disassembly of processing bodies—cellular structures involved in RNA turnover. This multifaceted interference with both viral and host RNA metabolism highlights SHFL’s integral role in the innate immune response."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Youichi Suzuki, Wei-Xin Chin, Qi'En Han, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Characterization of RyDEN (C19orf66) as an Interferon-Stimulated Cellular Inhibitor against Dengue Virus Replication."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Pathog (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.ppat.1005357"}], "href": "https://doi.org/10.1371/journal.ppat.1005357"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26735137"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26735137"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Corey A Balinsky, Hana Schmeisser, Alexandra I Wells, et al. "}, {"type": "b", "children": [{"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "IRAV"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " ("}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "FLJ11286"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": "), an Interferon-Stimulated Gene with Antiviral Activity against Dengue Virus, Interacts with MOV10."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Virol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/JVI.01606-16"}], "href": "https://doi.org/10.1128/JVI.01606-16"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27974568"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27974568"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yun Wu, Xinyu Yang, Zhicheng Yao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "C19orf66 interrupts Zika virus replication by inducing lysosomal degradation of viral NS3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Negl Trop Dis (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pntd.0008083"}], "href": "https://doi.org/10.1371/journal.pntd.0008083"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32150556"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32150556"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Volker Kinast, Agnieszka Plociennikowska, Anggakusuma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "C19orf66 is an interferon-induced inhibitor of HCV replication that restricts formation of the viral replication organelle."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Hepatol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jhep.2020.03.047"}], "href": "https://doi.org/10.1016/j.jhep.2020.03.047"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32294532"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32294532"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Ni Liu, Min Liu, Jun Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of genetic polymorphisms in the "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "C19orf66"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " gene and biochemical indices of HBV infected individuals in Yunnan."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Cell Infect Microbiol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fcimb.2023.1180366"}], "href": "https://doi.org/10.3389/fcimb.2023.1180366"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37293200"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37293200"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Yaxiang Zhang, Yue Feng, Yang Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic polymorphisms in the "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "C19orf66"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " gene influenced HIV-1 infection in a Yunnan population."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PeerJ (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7717/peerj.16005"}], "href": "https://doi.org/10.7717/peerj.16005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37701839"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37701839"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Sawsan Napthine, Chris H Hill, Holly C M Nugent, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Modulation of Viral Programmed Ribosomal Frameshifting and Stop Codon Readthrough by the Host Restriction Factor Shiftless."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Viruses (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/v13071230"}], "href": "https://doi.org/10.3390/v13071230"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34202160"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34202160"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Du Yu, Yundi Zhao, Junhui Pan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "C19orf66 Inhibits Japanese Encephalitis Virus Replication by Targeting -1 PRF and the NS3 Protein."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Virol Sin (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12250-021-00423-6"}], "href": "https://doi.org/10.1007/s12250-021-00423-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34309824"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34309824"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "William Rodriguez, Timothy Mehrmann, David Hatfield, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Shiftless Restricts Viral Gene Expression and Influences RNA Granule Formation during Kaposi's Sarcoma-Associated Herpesvirus Lytic Replication."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Virol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/jvi.01469-22"}], "href": "https://doi.org/10.1128/jvi.01469-22"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36326276"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36326276"}]}]}]}
NCBI Gene ID 55337
API
Download Associations
Predicted Functions View SHFL's ARCHS4 Predicted Functions.
Co-expressed Genes View SHFL's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SHFL's ARCHS4 Predicted Functions.

Functional Associations

SHFL has 2,270 functional associations with biological entities spanning 6 categories (chemical, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 36 datasets.

Click the + buttons to view associations for SHFL from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SHFL gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of SHFL gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CCLE Cell Line Proteomics Cell lines associated with SHFL protein from the CCLE Cell Line Proteomics dataset.
CellMarker Gene-Cell Type Associations cell types associated with SHFL gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of SHFL gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
ClinVar Gene-Phenotype Associations 2025 phenotypes associated with SHFL gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of SHFL gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing SHFL protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with SHFL protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of SHFL protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by SHFL gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with SHFL gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Biological Process Annotations 2023 biological processes involving SHFL gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving SHFL gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2023 cellular components containing SHFL protein from the curated GO Cellular Component Annotations 2023 dataset.
GO Cellular Component Annotations 2025 cellular components containing SHFL protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by SHFL gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by SHFL gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of SHFL gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of SHFL gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of SHFL gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
IMPC Knockout Mouse Phenotypes phenotypes of mice caused by SHFL gene knockout from the IMPC Knockout Mouse Phenotypes dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of SHFL gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of SHFL gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of SHFL gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
LINCS L1000 CMAP CRISPR Knockout Consensus Signatures gene perturbations changing expression of SHFL gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by SHFL gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of SHFL gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SHFL gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SHFL gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of SHFL gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of SHFL gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of SHFL gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of SHFL protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of SHFL protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with SHFL protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.