SLC25A5-AS1 Gene

Name SLC25A5 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent findings have uncovered a pivotal role for the long non‐coding RNA SLC25A5‑AS1 in gastric cancer, where its expression is markedly reduced in tumor tissues compared to adjacent normal tissues. This downregulation correlates with more aggressive clinicopathological features, such as increased tumor size, advanced TNM stage, and lymph node metastasis. Functionally, SLC25A5‑AS1 acts as a tumor suppressor by inhibiting cell proliferation, inducing G1 cell cycle arrest and apoptosis, and ultimately restraining tumor growth in vivo. Mechanistically, it serves as a competing endogenous RNA (ceRNA) that sequesters miR‑19a‑3p, thereby alleviating miR‑19a‑3p–mediated repression of PTEN and modulating the PI3K/AKT signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "Discerning a broader context of tissue regeneration and tumorigenesis, studies on the hematopoietic- and neurologic-expressed sequence 1 (Hn1) gene reveal its dynamic regulation in response to nerve injury. In models of facial nerve axotomy and vagus nerve injury, Hn1 mRNA is robustly upregulated in injured motoneurons, implicating this gene in the regenerative processes of the nervous system."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "Further investigations into Hn1 have demonstrated its multifaceted role in oncogenesis. In a murine melanoma model, siRNA-mediated depletion of Hn1 resulted in increased melanogenesis, perturbation of cell cycle regulators leading to G1/S arrest, and alterations in key signaling molecules such as c-Met, p27, p21, and p38 MAPK. Complementary studies in malignant gliomas confirmed Hn1 expression in high-grade tumors and showed that its depletion in glioma cells yielded significantly smaller tumor volumes in vivo, collectively suggesting that Hn1 functions as a suppressor of differentiation while promoting proliferative and regenerative cellular programs."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xiwen Li, Xin Yan, Feng Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Down-regulated lncRNA SLC25A5-AS1 facilitates cell growth and inhibits apoptosis via miR-19a-3p/PTEN/PI3K/AKT signalling pathway in gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.14200"}], "href": "https://doi.org/10.1111/jcmm.14200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30793479"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30793479"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Violetta Zujovic, Defang Luo, Henry V Baker, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The facial motor nucleus transcriptional program in response to peripheral nerve injury identifies Hn1 as a regeneration-associated gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci Res (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jnr.20676"}], "href": "https://doi.org/10.1002/jnr.20676"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16267826"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16267826"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Katharine M Laughlin, Defang Luo, Che Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Hematopoietic- and neurologic-expressed sequence 1 expression in the murine GL261 and high-grade human gliomas."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Pathol Oncol Res (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12253-008-9147-4"}], "href": "https://doi.org/10.1007/s12253-008-9147-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19145478"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19145478"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Katharine M Laughlin, Defang Luo, Che Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Hematopoietic- and neurologic-expressed sequence 1 (Hn1) depletion in B16.F10 melanoma cells promotes a differentiated phenotype that includes increased melanogenesis and cell cycle arrest."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Differentiation (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.diff.2009.04.001"}], "href": "https://doi.org/10.1016/j.diff.2009.04.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19427096"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19427096"}]}]}]}
NCBI Gene ID 100303728
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Predicted Functions View SLC25A5-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View SLC25A5-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SLC25A5-AS1's ARCHS4 Predicted Functions.

Functional Associations

SLC25A5-AS1 has 2,255 functional associations with biological entities spanning 5 categories (molecular profile, organism, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 20 datasets.

Click the + buttons to view associations for SLC25A5-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of SLC25A5-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of SLC25A5-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of SLC25A5-AS1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SLC25A5-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of SLC25A5-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with SLC25A5-AS1 gene from the CellMarker Gene-Cell Type Associations dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SLC25A5-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SLC25A5-AS1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SLC25A5-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SLC25A5-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SLC25A5-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of SLC25A5-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SLC25A5-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of SLC25A5-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SLC25A5-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SLC25A5-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SLC25A5-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of SLC25A5-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of SLC25A5-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SLC25A5-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.