SLC25A52 Gene

HGNC Family Solute carriers (SLC)
Name solute carrier family 25, member 52
Description This gene is similar to the mitochondrial carrier triple repeat 1 gene on chromosome 9. The gene is intronless and may be an evolving pseudogene; however, it is transcribed and it contains a full-length coding region so it is currently classified as a protein-coding locus. [provided by RefSeq, Jul 2008]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough the provided abstracts do not mention SLC25A52, they collectively illustrate the multifaceted functions of histone H3 lysine 27 (H3K27) demethylases—most notably UTX (also known as KDM6A) and its paralogue JMJD3—in orchestrating dynamic epigenetic regulation. These studies show that UTX demethylates the repressive H3K27me3 mark to facilitate transcriptional activation of key developmental and lineage‐specific genes. During embryogenesis and stem cell reprogramming, UTX (and, in some contexts, JMJD3) is required for the proper activation of developmental regulators and enhancer elements, thereby ensuring orderly differentiation in tissues such as mesoderm, neural lineages, germ cells, and muscle. Importantly, UTX functions through both its catalytic (demethylase‐dependent) activity as well as demethylase‐independent mechanisms by serving as a scaffold for chromatin‐remodeling complexes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "9"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn pathological contexts such as cancer and immune disorders, the role of these demethylases becomes even more nuanced. Several reports reveal that while JMJD3 can promote oncogenic programs—for example, by supporting T-cell acute lymphoblastic leukemia—the tumor suppressor function of UTX is demonstrated in multiple malignancies including bladder cancer, lung cancer, medulloblastoma, and certain hematopoietic disorders. Loss or inactivation of UTX leads to aberrant chromatin modification, altered enhancer landscapes, defective differentiation, and ultimately contributes to cancer progression and immunological dysregulation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "18"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond development and tumorigenesis, emerging data indicate that UTX-mediated H3K27 demethylation also regulates enhancer activation and metabolic as well as immunologic processes. In tissues such as skeletal muscle and brown adipose tissue, UTX guides the activation of transcriptional programs by both removing repressive marks and facilitating histone acetylation at critical gene promoters and enhancers. Similarly, in immune cells the modulation of H3K27 methylation by UTX is crucial for the proper execution of cytokine responses and lineage-specific gene expression that underlie antiviral defenses and inflammatory regulation. Collectively, these studies demonstrate the central role of active H3K27 demethylation in fine-tuning gene expression and cellular identity under both physiological and pathological conditions."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "19", "end_ref": "35"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, while none of the abstracts address SLC25A52, they comprehensively delineate how H3K27 demethylases—through precise removal of repressive chromatin marks and interaction with other epigenetic regulators—control gene expression programs that are essential for embryonic development, tissue regeneration, immune regulation, and tumor suppression. These findings underscore the therapeutic potential of targeting epigenetic modifiers in diverse disease contexts.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Young-Wook Cho, Teresa Hong, Sunhwa Hong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PTIP associates with MLL3- and MLL4-containing histone H3 lysine 4 methyltransferase complex."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M701574200"}], "href": "https://doi.org/10.1074/jbc.M701574200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17500065"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17500065"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Sunhwa Hong, Young-Wook Cho, Li-Rong Yu, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "UTX mediates demethylation of H3K27me3 at muscle-specific genes during myogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO J (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/emboj.2010.37"}], "href": "https://doi.org/10.1038/emboj.2010.37"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20300060"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20300060"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Sara A Miller, Sarah E Mohn, Amy S Weinmann "}, {"type": "b", "children": [{"type": "t", "text": "Jmjd3 and UTX play a demethylase-independent role in chromatin remodeling to regulate T-box family member-dependent gene expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2010.10.028"}], "href": "https://doi.org/10.1016/j.molcel.2010.10.028"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21095589"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21095589"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Abed AlFatah Mansour, Ohad Gafni, Leehee Weinberger, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The H3K27 demethylase Utx regulates somatic and germ cell epigenetic reprogramming."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature11272"}], "href": "https://doi.org/10.1038/nature11272"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22801502"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22801502"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "G Grant Welstead, Menno P Creyghton, Steve Bilodeau, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "UTX and UTY demonstrate histone demethylase-independent function in mouse embryonic development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1002964"}], "href": "https://doi.org/10.1371/journal.pgen.1002964"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23028370"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23028370"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Karl B Shpargel, Joshua Starmer, Della Yee, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Histone H3 Lysine 27 demethylases Jmjd3 and Utx are required for T-cell differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncomms9152"}], "href": "https://doi.org/10.1038/ncomms9152"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26328764"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26328764"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Kevin D Cook, Karl B Shpargel, Joshua Starmer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "T Follicular Helper Cell-Dependent Clearance of a Persistent Virus Infection Requires T Cell Expression of the Histone Demethylase UTX."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Immunity (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.immuni.2015.09.002"}], "href": "https://doi.org/10.1016/j.immuni.2015.09.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26431949"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26431949"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Shilpa S Dhar, Sung-Hun Lee, Kaifu Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An essential role for UTX in resolution and activation of bivalent promoters."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkv1516"}], "href": "https://doi.org/10.1093/nar/gkv1516"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26762983"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26762983"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Kyung Hyun Yoo, Sumin Oh, Keunsoo Kang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "The histone demethylase UTX regulates the lineage-specific epigenetic program of invariant natural killer T cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Immunol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ni.3644"}], "href": "https://doi.org/10.1038/ni.3644"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27992400"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27992400"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Chie Naruse, Shinwa Shibata, Masaru Tamura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "New insights into the role of Jmjd3 and Utx in axial skeletal formation in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FASEB J (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1096/fj.201600642R"}], "href": "https://doi.org/10.1096/fj.201600642R"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28188179"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28188179"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Xia Li, Qian Zhang, Qingzhu Shi, et al. 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Synonyms MCART2
Proteins S2552_HUMAN
NCBI Gene ID 147407
API
Download Associations
Predicted Functions View SLC25A52's ARCHS4 Predicted Functions.
Co-expressed Genes View SLC25A52's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SLC25A52's ARCHS4 Predicted Functions.

Functional Associations

SLC25A52 has 1,146 functional associations with biological entities spanning 9 categories (molecular profile, organism, functional term, phrase or reference, chemical, disease, phenotype or trait, structural feature, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 55 datasets.

Click the + buttons to view associations for SLC25A52 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of SLC25A52 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SLC25A52 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of SLC25A52 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SLC25A52 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Proteomics Cell lines associated with SLC25A52 protein from the CCLE Cell Line Proteomics dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SLC25A52 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SLC25A52 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of SLC25A52 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores cellular components containing SLC25A52 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing SLC25A52 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with SLC25A52 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SLC25A52 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene Mutation Profiles cell lines with SLC25A52 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of SLC25A52 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by SLC25A52 gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with SLC25A52 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with SLC25A52 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SLC25A52 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SLC25A52 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SLC25A52 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with SLC25A52 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SLC25A52 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of SLC25A52 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of SLC25A52 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GO Biological Process Annotations 2015 biological processes involving SLC25A52 gene from the curated GO Biological Process Annotations 2015 dataset.
GO Biological Process Annotations 2023 biological processes involving SLC25A52 gene from the curated GO Biological Process Annotations 2023 dataset.
GO Biological Process Annotations 2025 biological processes involving SLC25A52 gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2015 cellular components containing SLC25A52 protein from the curated GO Cellular Component Annotations 2015 dataset.
GO Molecular Function Annotations 2023 molecular functions performed by SLC25A52 gene from the curated GO Molecular Function Annotations 2023 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by SLC25A52 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of SLC25A52 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SLC25A52 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of SLC25A52 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SLC25A52 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with SLC25A52 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
HPA Cell Line Gene Expression Profiles cell lines with high or low expression of SLC25A52 gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset.
HPA Tissue Gene Expression Profiles tissues with high or low expression of SLC25A52 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset.
HPA Tissue Protein Expression Profiles tissues with high or low expression of SLC25A52 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset.
HPA Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SLC25A52 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with SLC25A52 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
InterPro Predicted Protein Domain Annotations protein domains predicted for SLC25A52 protein from the InterPro Predicted Protein Domain Annotations dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of SLC25A52 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of SLC25A52 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SLC25A52 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SLC25A52 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Curated Protein Localization Annotations cellular components containing SLC25A52 protein in low- or high-throughput protein localization assays from the LOCATE Curated Protein Localization Annotations dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain SLC25A52 protein from the LOCATE Predicted Protein Localization Annotations dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of SLC25A52 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Roadmap Epigenomics Cell and Tissue Gene Expression Profiles cell types and tissues with high or low expression of SLC25A52 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue Gene Expression Profiles dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of SLC25A52 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of SLC25A52 gene from the RummaGEO Gene Perturbation Signatures dataset.
Tabula Sapiens Gene-Cell Associations cell types with high or low expression of SLC25A52 gene relative to other cell types from the Tabula Sapiens Gene-Cell Associations dataset.
TargetScan Predicted Nonconserved microRNA Targets microRNAs regulating expression of SLC25A52 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of SLC25A52 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with SLC25A52 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.