SLC66A3 Gene

Name solute carrier family 66 member 3
Description Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]
Summary
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The studies describe how misregulation of mRNA translation—whether by defective polyadenylation, aberrant RNA binding activity, or altered signaling pathways—can lead to phenotypes ranging from premature cellular senescence, epithelial-to-mesenchyme transition, and impaired oocyte and follicle development to defects in synaptic function underlying neurodevelopmental and neurodegenerative conditions."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "20"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nImportantly, while these abstracts collectively provide a rich insight into the molecular mechanisms that regulate cytoplasmic mRNA translation and its implications for cell physiology and disease, none of them address or even mention SLC66A3. In other words, although SLC66A3—a member of the solute carrier family whose function in many contexts remains to be fully elucidated—might be hypothesized to intersect with cellular regulatory networks, the present literature does not offer any evidence or discussion regarding its role. This lack of information underscores an important gap in our understanding and indicates that further research is necessary to determine whether SLC66A3 participates in, or is regulated by, the translational control processes so thoroughly characterized in these studies."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "21", "end_ref": "28"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Joyce Tay, Rebecca Hodgman, Madathia Sarkissian, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Selective modulation of some forms of schaffer collateral-CA1 synaptic plasticity in mice with a disruption of the CPEB-1 gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Learn Mem (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/lm.72704"}], "href": "https://doi.org/10.1101/lm.72704"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15169862"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15169862"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Coleen M Atkins, Naohito Nozaki, Yasushi Shigeri, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Amyloid precursor proteins anchor CPEB to membranes and promote polyadenylation-induced translation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.25.24.10930-10939.2005"}], "href": "https://doi.org/10.1128/MCB.25.24.10930-10939.2005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16314516"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16314516"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Mi-Young Jung, Lori Lorenz, Joel D Richter "}, {"type": "b", "children": [{"type": "t", "text": "Translational control by neuroguidin, a eukaryotic initiation factor 4E and CPEB binding protein."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.02470-05"}], "href": "https://doi.org/10.1128/MCB.02470-05"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16705177"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16705177"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Irina Groisman, Maria Ivshina, Veronica Marin, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Bidirectional control of mRNA translation and synaptic plasticity by the cytoplasmic polyadenylation complex."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2012.05.016"}], "href": "https://doi.org/10.1016/j.molcel.2012.05.016"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22727665"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22727665"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Tsuyoshi Udagawa, Natalie G Farny, Mira Jakovcevski, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "CPEB regulation of TAK1 synthesis mediates cytokine production and the inflammatory immune response."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.00800-14"}], "href": "https://doi.org/10.1128/MCB.00800-14"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25452303"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25452303"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Vittorio Calderone, Javier Gallego, Gonzalo Fernandez-Miranda, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "DAZL and CPEB1 regulate mRNA translation synergistically during oocyte maturation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.179218"}], "href": "https://doi.org/10.1242/jcs.179218"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26826184"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26826184"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Jiao Yue, Xin-Shang Wang, Yan-Yan Guo, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Noncanonical cytoplasmic poly(A) polymerases regulate RNA levels, alternative RNA processing, and synaptic plasticity but not hippocampal-dependent behaviours."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "RNA Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15476286.2020.1824061"}], "href": "https://doi.org/10.1080/15476286.2020.1824061"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32954964"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32954964"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Souichi Oe, Taro Koike, Yukie Hirahara, et al. "}, {"type": "b", "children": [{"type": "t", "text": "AUF1, an mRNA decay factor, has a discordant role in Cpeb1 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2020.11.054"}], "href": "https://doi.org/10.1016/j.bbrc.2020.11.054"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33220927"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33220927"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Gelei Xiao, Qianwei Chen, Xuewei Zhang "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA-455-5p/CPEB1 pathway mediates Aβ-related learning and memory deficits in a mouse model of Alzheimer's disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain Res Bull (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.brainresbull.2021.10.008"}], "href": "https://doi.org/10.1016/j.brainresbull.2021.10.008"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34678444"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34678444"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Qianxing Hu, Jinming Mu, Yuhong Liu, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "CPEB1 regulates the inflammatory immune response, phagocytosis, and alternative polyadenylation in microglia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Glia (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/glia.24222"}], "href": "https://doi.org/10.1002/glia.24222"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35635122"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35635122"}]}, {"type": "r", "ref": 27, "children": [{"type": "t", "text": "Zhihua Zhang, Ruyi Liu, Hongbin Zhou, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Multiple intersecting pathways are involved in CPEB1 phosphorylation and regulation of translation during mouse oocyte meiosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.202712"}], "href": "https://doi.org/10.1242/dev.202712"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38785133"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38785133"}]}]}]}
NCBI Gene ID 130814
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Predicted Functions View SLC66A3's ARCHS4 Predicted Functions.
Co-expressed Genes View SLC66A3's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SLC66A3's ARCHS4 Predicted Functions.

Functional Associations

SLC66A3 has 1,639 functional associations with biological entities spanning 6 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 24 datasets.

Click the + buttons to view associations for SLC66A3 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SLC66A3 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of SLC66A3 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CellMarker Gene-Cell Type Associations cell types associated with SLC66A3 gene from the CellMarker Gene-Cell Type Associations dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of SLC66A3 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with SLC66A3 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with SLC66A3 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of SLC66A3 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of SLC66A3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of SLC66A3 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with SLC66A3 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of SLC66A3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of SLC66A3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of SLC66A3 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
MoTrPAC Rat Endurance Exercise Training tissue samples with high or low expression of SLC66A3 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of SLC66A3 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SLC66A3 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SLC66A3 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of SLC66A3 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of SLC66A3 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of SLC66A3 gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of SLC66A3 gene from the Sci-Plex Drug Perturbation Signatures dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of SLC66A3 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of SLC66A3 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with SLC66A3 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.