| Name | SLCO4A1 antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nLong noncoding RNAs (lncRNAs) have emerged as key regulators in tumorigenesis, and recent studies have begun to define the role of SLCO4A1‐AS1 in this context. In colorectal cancer (CRC), where many lncRNAs are known to be involved in malignant transformation"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", SLCO4A1‐AS1 has been shown to promote tumor progression. Functionally, in CRC cells its knockdown represses cytoprotective autophagy and cell proliferation by directly targeting partition-defective 3 (PARD3) via a mechanism in which SLCO4A1‐AS1 sequesters miR‑508‑3p, leading to the upregulation of PARD3."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In colon cancer stem cells, SLCO4A1‐AS1 acts as a competing endogenous RNA by binding miR‑150‑3p, thereby elevating SLCO4A1 expression; this, in turn, enhances migration, invasion, sphere formation, and tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Moreover, its upregulation in CRC has been further underscored by additional profiling studies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond CRC, SLCO4A1‐AS1 has been implicated in the progression of multiple other malignancies. In non‐small‐cell lung cancer (NSCLC), elevated levels of SLCO4A1‐AS1 promote proliferation, migration, and invasion while simultaneously inhibiting apoptosis by sponging miR‑223‑3p; this results in enhanced expression of IKKα and subsequent activation of the NF‑κB signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Similar regulatory functions have been suggested in hematologic and head and neck malignancies, with studies in acute lymphocytic leukemia (ALL) and laryngeal squamous cell carcinoma (LSCC) implicating SLCO4A1‐AS1 in tumorigenesis, though the specific downstream mechanisms remain to be fully elucidated."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition, in melanoma, SLCO4A1‐AS1 has been identified as an oncogenic lncRNA that, when overexpressed, facilitates malignant behaviors. Mechanistic studies reveal that SLCO4A1‐AS1 acts by binding to miR‑1306‑5p, which results in the de-repression of polycomb group ring finger 2 (PCGF2). The ensuing upregulation of PCGF2 enhances melanoma cell proliferation, migration, and invasion while reducing apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jiangtao Yu, Zhiyang Han, Ziquan Sun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA SLCO4A1-AS1 facilitates growth and metastasis of colorectal cancer through β-catenin-dependent Wnt pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Clin Cancer Res (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13046-018-0896-y"}], "href": "https://doi.org/10.1186/s13046-018-0896-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30201010"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30201010"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Zhaozhi Wang, Jianjun Jin "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA SLCO4A1-AS1 promotes colorectal cancer cell proliferation by enhancing autophagy via miR-508-3p/PARD3 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.102081"}], "href": "https://doi.org/10.18632/aging.102081"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31308265"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31308265"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Kun Wu, Ting Xu, Xudong Song, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA SLCO4A1-AS1 modulates colon cancer stem cell properties by binding to miR-150-3p and positively regulating SLCO4A1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Lab Invest (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41374-021-00577-7"}], "href": "https://doi.org/10.1038/s41374-021-00577-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33958701"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33958701"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Jia Zhang, Kaisa Cui, Liuying Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SLCO4A1-AS1 promotes colorectal tumourigenesis by regulating Cdk2/c-Myc signalling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biomed Sci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12929-022-00789-z"}], "href": "https://doi.org/10.1186/s12929-022-00789-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35039060"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35039060"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Qingpeng Li, Bo Jiang, Yang Qi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA SLCO4A1-AS1 drives the progression of non-small-cell lung cancer by modulating miR-223-3p/IKKα/NF-κB signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Biol Ther (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15384047.2020.1787757"}], "href": "https://doi.org/10.1080/15384047.2020.1787757"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32687454"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32687454"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Jianping Mao, Wenliang Gao, Lianguo Xue, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The lncRNA SLCO4A1-AS1/miR-876-3p/RBBP6 axis regulates cell proliferation and apoptosis in acute lymphocytic leukemia via the JNK signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Lab Hematol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/ijlh.13501"}], "href": "https://doi.org/10.1111/ijlh.13501"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33683013"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33683013"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Feng Zhang, Dehong Mao, Zhongmei He, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SLCO4A1-AS1 regulates laryngeal squamous cell carcinoma cell phenotypes via the Wnt pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oral Dis (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/odi.13893"}], "href": "https://doi.org/10.1111/odi.13893"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33914996"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33914996"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Kai Wang, Min Li, Hongyan Duan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SLCO4A1-AS1 triggers the malignant behaviours of melanoma cells via sponging miR-1306-5p to enhance PCGF2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Dermatol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/exd.14577"}], "href": "https://doi.org/10.1111/exd.14577"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35427425"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35427425"}]}]}]}
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| NCBI Gene ID | 100127888 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SLCO4A1-AS1 has 411 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.
Click the + buttons to view associations for SLCO4A1-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of SLCO4A1-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of SLCO4A1-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SLCO4A1-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SLCO4A1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of SLCO4A1-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SLCO4A1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of SLCO4A1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |