SMIM2-AS1 Gene

Name SMIM2 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough the provided abstracts do not directly mention SMIM2‐AS1, they collectively describe the intricate regulation of glutamatergic signaling via kainate receptor subunits—such as GRIK4, GluK4, and KA1—that modulate mood, anxiety, cognition, and even nociception. These studies reveal that alterations in receptor expression or function can lead to marked behavioral and synaptic phenotypes, implying that precise regulatory mechanisms are crucial for normal brain function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther investigations detailed in these abstracts demonstrate that both loss‐of-function and overexpression of kainate receptor subunits yield significant changes in synaptic plasticity and behavior. For instance, knockout studies show reduced anxiety and enhanced neuroprotection, whereas overexpression leads to social and affective impairments. These findings underscore the importance of regulatory elements in fine-tuning receptor expression and synaptic transmission—a role that long noncoding RNAs (such as SMIM2‐AS1) might hypothetically fulfill, even though none of these studies address SMIM2‐AS1 directly."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFinally, detailed analyses of synaptic targeting and stabilization mechanisms for glutamate receptors reveal a multifaceted network controlling excitatory neurotransmission. The complexity of these systems suggests that additional regulatory molecules—including antisense RNAs like SMIM2‐AS1—could potentially modulate key aspects of receptor expression and function. Future research focusing on post‐transcriptional regulation may uncover whether SMIM2‐AS1 participates in the control of synaptic receptor composition or in broader neuropsychiatric processes, thereby complementing the mechanistic insights provided by these studies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Seon Ah Park, Soo Joung Park, Seong Kyu Han "}, {"type": "b", "children": [{"type": "t", "text": "Expression of KA1 kainate receptor subunit in the substantia gelatinosa of the trigeminal subnucleus caudalis in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Vet Sci (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4142/jvs.2010.11.4.299"}], "href": "https://doi.org/10.4142/jvs.2010.11.4.299"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21113098"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21113098"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Justin S Catches, Jian Xu, Anis Contractor "}, {"type": "b", "children": [{"type": "t", "text": "Genetic ablation of the GluK4 kainate receptor subunit causes anxiolytic and antidepressant-like behavior in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Behav Brain Res (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbr.2011.12.026"}], "href": "https://doi.org/10.1016/j.bbr.2011.12.026"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22203159"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22203159"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "E R Lowry, A Kruyer, E H Norris, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The GluK4 kainate receptor subunit regulates memory, mood, and excitotoxic neurodegeneration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuroscience (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuroscience.2013.01.029"}], "href": "https://doi.org/10.1016/j.neuroscience.2013.01.029"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23357115"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23357115"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Jon Palacios-Filardo, M Isabel Aller, Juan Lerma "}, {"type": "b", "children": [{"type": "t", "text": "Synaptic Targeting of Kainate Receptors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cereb Cortex (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/cercor/bhu244"}], "href": "https://doi.org/10.1093/cercor/bhu244"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25316333"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25316333"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "M Isabel Aller, Valeria Pecoraro, Ana V Paternain, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Increased Dosage of High-Affinity Kainate Receptor Gene grik4 Alters Synaptic Transmission and Reproduces Autism Spectrum Disorders Features."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1523/JNEUROSCI.2217-15.2015"}], "href": "https://doi.org/10.1523/JNEUROSCI.2217-15.2015"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26446216"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26446216"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Christoph Straub, Yoav Noam, Toshihiro Nomura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Distinct Subunit Domains Govern Synaptic Stability and Specificity of the Kainate Receptor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.celrep.2016.05.093"}], "href": "https://doi.org/10.1016/j.celrep.2016.05.093"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27346345"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27346345"}]}]}]}
Synonyms C3ORF81-AS1, C13ORF44-AS1
NCBI Gene ID 101929212
API
Download Associations
Predicted Functions View SMIM2-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View SMIM2-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SMIM2-AS1's ARCHS4 Predicted Functions.

Functional Associations

SMIM2-AS1 has 778 functional associations with biological entities spanning 3 categories (chemical, disease, phenotype or trait, cell line, cell type or tissue) extracted from 8 datasets.

Click the + buttons to view associations for SMIM2-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of SMIM2-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SMIM2-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SMIM2-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SMIM2-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with SMIM2-AS1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
GWASdb SNP-Disease Associations diseases associated with SMIM2-AS1 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with SMIM2-AS1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with SMIM2-AS1 gene from the HuBMAP Azimuth Cell Type Annotations dataset.