SMIM26 Gene

Name small integral membrane protein 26
Description Enables protein kinase binding activity and transmembrane transporter binding activity. Located in mitochondrial outer membrane. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough traditional chromatin regulators such as BRPF3 have been shown to form functional complexes essential for development and epigenetic regulation"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", emerging research has uncovered a novel class of small proteins encoded by long noncoding RNAs. One notable example is SMIM26, a microprotein produced from the LINC00493 transcript, which has attracted attention for its distinct mitochondrial functions and roles in cellular regulation.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nRibosome-profiling and proteomic analyses have confirmed that LINC00493 harbors a small open reading frame that is translated into a 95–amino acid product, SMIM26. Immunofluorescence studies further revealed that SMIM26 localizes specifically to mitochondria, and its interaction network includes several mitochondrial proteins."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFunctionally, SMIM26 has been implicated in cancer biology, particularly in clear cell renal cell carcinoma (ccRCC). In ccRCC, SMIM26 is tendentiously downregulated and its reduced expression correlates with poor overall survival. Mechanistically, SMIM26 exerts anti-metastatic effects by interacting via its N-terminus with acylglycerol kinase (AGK) and the glutathione transport regulator SLC25A11, which enhances the mitochondrial localization of AGK. This interaction inhibits AGK-mediated AKT phosphorylation and supports mitochondrial glutathione import and respiratory efficiency. Intriguingly, complementary knockdown and overexpression experiments indicate that while the SMIM26 protein suppresses tumor cell growth and metastatic lung colonization, the parent LINC00493 transcript appears to affect cell viability in the opposite direction."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Kezhi Yan, Linya You, Cindy Degerny, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Chromatin Regulator BRPF3 Preferentially Activates the HBO1 Acetyltransferase but Is Dispensable for Mouse Development and Survival."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M115.703041"}], "href": "https://doi.org/10.1074/jbc.M115.703041"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26677226"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26677226"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Fouzia Yeasmin, Naoto Imamachi, Tanzina Tanu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification and analysis of short open reading frames (sORFs) in the initially annotated noncoding RNA LINC00493 from human cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biochem (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/jb/mvaa143"}], "href": "https://doi.org/10.1093/jb/mvaa143"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33386847"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33386847"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Daria Konina, Peter Sparber, Iuliia Viakhireva, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Investigation of LINC00493/SMIM26 Gene Suggests Its Dual Functioning at mRNA and Protein Level."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms22168477"}], "href": "https://doi.org/10.3390/ijms22168477"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34445188"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34445188"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Kun Meng, Shaohua Lu, Yu-Ying Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00493-encoded microprotein SMIM26 exerts anti-metastatic activity in renal cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO Rep (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.15252/embr.202256282"}], "href": "https://doi.org/10.15252/embr.202256282"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37009826"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37009826"}]}]}]}
NCBI Gene ID 388789
API
Download Associations
Predicted Functions View SMIM26's ARCHS4 Predicted Functions.
Co-expressed Genes View SMIM26's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SMIM26's ARCHS4 Predicted Functions.

Functional Associations

SMIM26 has 948 functional associations with biological entities spanning 6 categories (functional term, phrase or reference, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 23 datasets.

Click the + buttons to view associations for SMIM26 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SMIM26 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with SMIM26 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Targets 2022 transcription factors binding the promoter of SMIM26 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of SMIM26 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing SMIM26 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with SMIM26 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DeepCoverMOA Drug Mechanisms of Action small molecule perturbations with high or low expression of SMIM26 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with SMIM26 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing SMIM26 protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by SMIM26 gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of SMIM26 gene from the GTEx eQTL 2025 dataset.
GTEx Tissue Gene Expression Profiles 2023 tissues with high or low expression of SMIM26 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of SMIM26 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of SMIM26 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of SMIM26 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of SMIM26 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SMIM26 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SMIM26 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SMIM26 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of SMIM26 gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of SMIM26 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of SMIM26 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with SMIM26 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.