SMIM27 Gene

Name small integral membrane protein 27
Description Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent studies have revealed that SMIM27 (also known as HMGB4) plays a critical role in mediating the cellular response to DNA damage. In one investigation, SMIM27 was shown to bind cisplatin‐modified DNA lesions—specifically the 1,2-intrastrand d(GpG) cross-link—with exceptionally high affinity. This strong binding, which is reinforced by the absence of a C-terminal acidic tail and the pivotal contribution of residue Phe37, markedly interferes with the repair of these lesions. Such effects may underlie the noted hypersensitivity of testicular germ cell tumors to cisplatin-based therapy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn a complementary study focusing on non-germ cell contexts, SMIM27 was found to be expressed in neuronal cells, where it localizes to the nucleus and interacts with histones. Its expression leads to altered post-translational modifications of histones and a significant shift in the transcriptional landscape—with over 800 genes affected—including those linked to neuronal differentiation. Moreover, overexpression of SMIM27 increases cellular susceptibility to topoisomerase inhibitors, underscoring a role in modulating chromatin dynamics and cell viability in response to chemotherapeutic agents."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nTogether, these findings portray SMIM27 as a multifaceted regulator that integrates DNA damage recognition and chromatin remodeling functions. On one hand, its strong and structurally unique binding to cisplatin-damaged DNA disrupts repair processes, potentially contributing to chemotherapy sensitivity. On the other, its involvement in modulating histone modifications and regulating gene expression in neuronal cells suggests roles in cellular differentiation and survival. These dual aspects make SMIM27 an intriguing target for further studies in both oncologic and neurological contexts."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Semi Park, Stephen J Lippard "}, {"type": "b", "children": [{"type": "t", "text": "Binding interaction of HMGB4 with cisplatin-modified DNA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochemistry (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1021/bi300649v"}], "href": "https://doi.org/10.1021/bi300649v"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22901013"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22901013"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ari Rouhiainen, Xiang Zhao, Päivi Vanttola, et al. "}, {"type": "b", "children": [{"type": "t", "text": "HMGB4 is expressed by neuronal cells and affects the expression of genes involved in neural differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep32960"}], "href": "https://doi.org/10.1038/srep32960"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27608812"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27608812"}]}]}]}
NCBI Gene ID 100129250
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Predicted Functions View SMIM27's ARCHS4 Predicted Functions.
Co-expressed Genes View SMIM27's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SMIM27's ARCHS4 Predicted Functions.

Functional Associations

SMIM27 has 921 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.

Click the + buttons to view associations for SMIM27 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SMIM27 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with SMIM27 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with SMIM27 gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of SMIM27 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
LINCS L1000 CMAP Chemical Perturbation Consensus Signatures small molecule perturbations changing expression of SMIM27 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of SMIM27 gene from the NIBR DRUG-seq U2OS MoA Box dataset.
Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SMIM27 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SMIM27 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset.
Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures gene perturbations changing expression of SMIM27 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of SMIM27 gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of SMIM27 gene from the RummaGEO Gene Perturbation Signatures dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with SMIM27 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.