| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA host gene 16 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRecent studies have demonstrated that the long non‐coding RNA SNHG16 is frequently overexpressed in a wide spectrum of malignancies—including colorectal, gastric, cervical, bladder, breast, glioma, hepatocellular, lung, ovarian, diffuse large B‐cell lymphoma, osteosarcoma and neuroblastoma—as well as in various inflammatory and other pathological conditions. Elevated SNHG16 levels have been associated with advanced tumor stage, enhanced cell proliferation, migration, invasion, impaired apoptosis and poor clinical prognosis, which underscores its potential value as a prognostic biomarker and therapeutic target in cancer management."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "13"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMechanistically, SNHG16 exerts its oncogenic influence primarily by acting as a competing endogenous RNA (ceRNA), directly interacting with—and sequestering—a variety of tumor‐suppressive microRNAs (for example, miR‑16‑5p, miR‑98, miR‑216‑5p, miR‑4500, let‑7b‑5p, miR‑30a, miR‑17‑5p and others). This “sponging” activity relieves repression of crucial downstream effectors such as SMAD5, E2F5, PIM1, CDC25B, TIMP3, FGF19, and RRM2, thereby promoting cell cycle progression, epithelial–mesenchymal transition (EMT), invasion and migration. These molecular events have been documented in several cancer models including non–small‐cell lung cancer, glioma, osteosarcoma and diffuse large B‐cell lymphoma, highlighting a central role for the SNHG16‐mediated regulatory network in tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "14", "end_ref": "29"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its role in cancer cell intrinsic processes, SNHG16 also contributes to other pathogenic mechanisms such as therapeutic resistance, immune modulation and intercellular signaling. For instance, SNHG16 has been implicated in conferring sorafenib resistance in hepatocellular carcinoma, modulating CD73 expression to promote immunosuppressive phenotypes in specific T‐cell subsets, and even influencing vascular smooth muscle cell proliferation in atherosclerosis. Its presence in tumor‐derived exosomes further suggests a role in remodeling the tumor microenvironment and facilitating metastasis. Collectively, these findings reveal SNHG16 as a multifaceted regulator whose ceRNA‐mediated interplay with specific microRNAs and target genes underpins diverse cellular functions and positions it as an attractive candidate for both diagnostic and therapeutic strategies."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "30", "end_ref": "46"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Lise Lotte Christensen, Kirsten True, Mark P Hamilton, et al. 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| Synonyms | Nbla12061, NCRAN, Nbla10727 |
| NCBI Gene ID | 100507246 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNHG16 has 844 functional associations with biological entities spanning 5 categories (organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.
Click the + buttons to view associations for SNHG16 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of SNHG16 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNHG16 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with SNHG16 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNHG16 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of SNHG16 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SNHG16 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of SNHG16 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SNHG16 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of SNHG16 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of SNHG16 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of SNHG16 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SNHG16 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNHG16 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of SNHG16 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| MiRTarBase microRNA Targets | microRNAs targeting SNHG16 gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNHG16 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of SNHG16 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |