| Name | small nucleolar RNA host gene 17 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSmall nucleolar RNA host gene 17 (SNHG17) is emerging as a multifunctional long noncoding RNA with potent oncogenic properties in a wide array of human malignancies. Numerous studies have shown that SNHG17 is significantly upregulated in cancers such as colorectal cancer, gastric cancer, melanoma, tongue squamous cell carcinoma, astrocytoma, oral squamous cell carcinoma, ovarian, lung, hepatocellular, esophageal, prostate, and osteosarcoma. Its high expression is closely correlated with advanced tumor stage, deep invasion, lymphatic metastasis, poor differentiation, and unfavorable overall survival. Functionally, SNHG17 promotes cell proliferation, accelerates cell cycle progression, enhances invasion and migration, and drives epithelial‐to‐mesenchymal transition – all of which contribute to tumor growth and metastasis. In many of these studies, SNHG17 has also demonstrated potential diagnostic value by virtue of its altered expression pattern in patient tissues and even plasma samples."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "19"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAt the molecular level, SNHG17 exerts its oncogenic functions via multiple mechanisms. It interacts with chromatin‐modifying complexes—most notably the polycomb repressive complex 2—to epigenetically silence tumor‐suppressor genes such as cyclin‐dependent kinase inhibitors. In addition, SNHG17 stabilizes oncogenic proteins (for example, c-Myc through binding partners like LRPPRC) and functions as a competing endogenous RNA (ceRNA), sponging microRNAs (including miR‑876, miR‑338‑3p, and members of the miR‑23 family) to upregulate key targets such as SP1, SOX4, OTUB1, and factors involved in DNA repair like Rad51. These interactions not only favor cell cycle progression and tumor proliferation but also redirect DNA repair pathways—shifting the balance from high-fidelity homologous recombination to error-prone nonhomologous end joining—and have been implicated in chemoresistance and radiation-induced epithelial–mesenchymal transition. Moreover, emerging evidence indicates that SNHG17 modulates the tumor microenvironment; for example, by influencing macrophage polarization through exosome-mediated transfer, it contributes to immune evasion processes. Complementing its tumor-promoting roles, SNHG17 exhibits context-dependent functions as exemplified by its downregulation in type 2 diabetes mellitus, where altered expression is correlated with metabolic disturbances."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "20", "end_ref": "24"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Zhonghua Ma, Shengying Gu, Min Song, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "SNHG17 enhances the malignant characteristics of tongue squamous cell carcinoma by acting as a competing endogenous RNA on microRNA-876 and thereby increasing specificity protein 1 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Cycle (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15384101.2020.1727399"}], "href": "https://doi.org/10.1080/15384101.2020.1727399"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32089063"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32089063"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Fengping Du, Qian Hou "}, {"type": "b", "children": [{"type": "t", "text": "SNHG17 drives malignant behaviors in astrocytoma by targeting miR-876-5p/ERLIN2 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12885-020-07280-8"}], "href": "https://doi.org/10.1186/s12885-020-07280-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32883232"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32883232"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Fei Tong, Jun Guo, Zhanqi Miao, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Deregulation of long noncoding RNA SNHG17 and TTC28-AS1 is associated with type 2 diabetes mellitus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Scand J Clin Lab Invest (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/00365513.2019.1664760"}], "href": "https://doi.org/10.1080/00365513.2019.1664760"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31509021"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31509021"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Taotao Han, Xiaohui Jing, Jiayu Bao, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Lactobacillus rhamnosus GG ameliorates radiation-induced lung fibrosis via lncRNASNHG17/PTBP1/NICD axis modulation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biol Direct (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13062-023-00357-x"}], "href": "https://doi.org/10.1186/s13062-023-00357-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36635762"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36635762"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Jiayu Lin, Yihao Liu, Pengyi Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SNHG17 alters anaerobic glycolysis by resetting phosphorylation modification of PGK1 to foster pro-tumor macrophage formation in pancreatic ductal adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Clin Cancer Res (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13046-023-02890-z"}], "href": "https://doi.org/10.1186/s13046-023-02890-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38098044"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38098044"}]}]}]}
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| NCBI Gene ID | 388796 |
| API | |
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| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNHG17 has 988 functional associations with biological entities spanning 5 categories (chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 17 datasets.
Click the + buttons to view associations for SNHG17 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of SNHG17 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of SNHG17 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of SNHG17 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNHG17 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with SNHG17 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNHG17 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SNHG17 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of SNHG17 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SNHG17 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of SNHG17 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GTEx eQTL | SNPs regulating expression of SNHG17 gene from the GTEx eQTL dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of SNHG17 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SNHG17 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNHG17 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of SNHG17 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain SNHG17 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNHG17 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |