SNORA1 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, H/ACA box 1
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nEFhd1 is a mitochondrial Ca2⁺‐binding protein that plays a pivotal role in regulating cellular metabolism during early B‐cell development. In pro B cells, EFhd1 is highly expressed and helps maintain a balance between oxidative phosphorylation and glycolysis, thereby influencing the energy profile necessary for cell proliferation. Upon pre–B‐cell receptor expression, its downregulation facilitates a switch in metabolic activity that is critical for the timely progression from the pro to the pre B cell stage. Disruption of EFhd1 levels—whether by knockdown or prolonged expression—leads to altered mitochondrial function and an intrinsic developmental disadvantage in the B‐cell lineage."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}, {"type": "p", "children": [{"type": "t", "text": "\nIn the nervous system, EFhd1 similarly contributes to energy homeostasis and mitochondrial integrity, ensuring sufficient ATP production during the high metabolic demands of axonal growth and branching. Sensory neurons deficient in key upstream regulators of energy balance exhibit a marked reduction in EFhd1 expression, which correlates with mitochondrial dysfunction, a decrease in axonal ATP levels, and an accumulation of autophagic flux via the AMPK–Ulk pathway. The loss of EFhd1 in these neurons not only compromises mitochondrial morphology at axonal growth cones but also impairs overall axonal morphogenesis and increases neuronal apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}, {"type": "p", "children": [{"type": "t", "text": "\nOverall, EFhd1 emerges as an essential modulator of mitochondrial function in diverse cellular contexts. In both developing B cells and sensory neurons, it governs critical aspects of energy metabolism and mitochondrial dynamics, ensuring proper cell differentiation and survival. The protein’s regulation of Ca2⁺‐mediated mitochondrial responses underscores its broader significance in coordinating cellular metabolism with developmental cues and stress responses."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}]}]}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Merle Stein, Sebastian Dütting, Dimitrios Mougiakakos, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A defined metabolic state in pre B cells governs B-cell development and is counterbalanced by Swiprosin-2/EFhd1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Differ (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/cdd.2017.52"}], "href": "https://doi.org/10.1038/cdd.2017.52"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28524857"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28524857"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Valeria Ulisse, Swagata Dey, Deborah E Rothbard, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of axonal morphogenesis by the mitochondrial protein Efhd1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Life Sci Alliance (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26508/lsa.202000753"}], "href": "https://doi.org/10.26508/lsa.202000753"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32414840"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32414840"}]}]}]}
Synonyms ACA1
NCBI Gene ID 677792
API
Download Associations
Predicted Functions View SNORA1's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORA1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORA1's ARCHS4 Predicted Functions.

Functional Associations

SNORA1 has 1,045 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 19 datasets.

Click the + buttons to view associations for SNORA1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORA1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORA1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORA1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SNORA1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SNORA1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SNORA1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Hub Proteins Protein-Protein Interactions interacting hub proteins for SNORA1 from the curated Hub Proteins Protein-Protein Interactions dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORA1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of SNORA1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SNORA1 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORA1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of SNORA1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.