| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, H/ACA box 12 |
| Description | Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA12, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nResearch into systemic lupus erythematosus (SLE) has revealed that small nucleolar RNA SNORA12, an H/ACA box snoRNA, plays a role in T cell function. In T cells from SLE patients, SNORA12 is expressed at lower levels compared to normal T cells, and its diminished expression correlates with increased disease activity. Functional studies in Jurkat cells showed that overexpression of SNORA12 modulates the expression of several genes including an increase in the activation marker CD69 and a decrease in HIST1H4K expression, along with inhibited interferon gamma secretion. These findings suggest that SNORA12 contributes to T cell dysregulation and may be involved in the immunopathogenesis of SLE."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "Disparate studies have analyzed the regulation of glycosylation pathways by examining GalNAc-4-sulfotransferases, enzymes involved in the sulfate modification of glycoproteins. Although unrelated to SNORA12, these investigations provide context regarding the complex regulation of post-translational modifications that can affect protein structure and function across multiple tissues."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "Additional research has focused on how the expression levels of carbohydrate sulfotransferases influence the glycosaminoglycan environment, thereby affecting processes such as the conversion of cellular prion proteins to their pathological isoforms. This work underscores the broader impact of gene expression regulation on molecular interactions and protein modifications, serving as a complementary perspective on how dysregulation—like that observed for SNORA12 in T cells—might contribute to disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "N-S Lai, H-C Yu, K-Y Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Decreased T cell expression of H/ACA box small nucleolar RNA 12 promotes lupus pathogenesis in patients with systemic lupus erythematosus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Lupus (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/0961203318778362"}], "href": "https://doi.org/10.1177/0961203318778362"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29848166"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29848166"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Rajeev K Boregowda, YiLing Mi, Hongyin Bu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Differential expression and enzymatic properties of GalNAc-4-sulfotransferase-1 and GalNAc-4-sulfotransferase-2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Glycobiology (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/glycob/cwj024"}], "href": "https://doi.org/10.1093/glycob/cwj024"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16079414"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16079414"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Renaud Martin, Sandrine Chantepie, Jérôme Chapuis, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Variation in Chst8 gene expression level affects PrPC to PrPSc conversion efficiency in prion-infected Mov cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2011.09.126"}], "href": "https://doi.org/10.1016/j.bbrc.2011.09.126"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21982770"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21982770"}]}]}]}
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| Synonyms | U108 |
| NCBI Gene ID | 677800 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORA12 has 940 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.
Click the + buttons to view associations for SNORA12 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORA12 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA12 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SNORA12 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORA12 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA12 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORA12 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SNORA12 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SNORA12 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of SNORA12 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SNORA12 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SNORA12 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORA12 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of SNORA12 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNORA12 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORA12 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of SNORA12 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |