| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, H/ACA box 13 |
| Description | Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe four studies collectively illustrate the central role of RNA processing—specifically, the regulation of alternative polyadenylation by Nudt21 (also known as CFIm25)—in orchestrating cell fate decisions, transcript isoform diversity, and tissue remodeling. Although none of these abstracts directly address SNORA13, the findings provide important context for RNA‐mediated regulatory mechanisms that could extend to other RNA species. For instance, in cellular reprogramming and differentiation, suppression of Nudt21 accelerates the acquisition of pluripotency and alters differentiation trajectories by modulating the 3′ untranslated regions (3′UTRs) of over 1,500 transcripts, many of which encode chromatin regulators that subsequently influence cell identity and fate."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the male germ cell context, alternative polyadenylation is harnessed to generate cell-specific mRNA isoforms that often forgo canonical polyadenylation signals. Here, CFIm subunits, including Nudt21, are expressed as shorter mRNAs in spermatogenic cells, suggesting an autoregulatory mechanism that fine-tunes their levels to facilitate proper transcript maturation during spermatogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nMoreover, both idiopathic pulmonary fibrosis and systemic sclerosis exhibit downregulation of CFIm25/Nudt21, leading to widespread 3′UTR shortening of key pro-fibrotic transcripts. This process removes microRNA binding sites, enhances the translation of fibrotic factors, and ultimately drives extracellular matrix remodeling and fibrotic pathology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Together, these studies underscore the importance of alternative polyadenylation in both normal developmental processes and disease states, and while they do not specifically assess SNORA13, they lay a foundation for exploring how other noncoding RNAs might intersect with these post-transcriptional regulatory pathways.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Justin Brumbaugh, Bruno Di Stefano, Xiuye Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nudt21 Controls Cell Fate by Connecting Alternative Polyadenylation to Chromatin Signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2017.11.023"}], "href": "https://doi.org/10.1016/j.cell.2017.11.023"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29249356"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29249356"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Becky L Sartini, Hang Wang, Wei Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pre-messenger RNA cleavage factor I (CFIm): potential role in alternative polyadenylation during spermatogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biol Reprod (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1095/biolreprod.107.064774"}], "href": "https://doi.org/10.1095/biolreprod.107.064774"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18032416"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18032416"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Tingting Weng, Junsuk Ko, Chioniso P Masamha, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cleavage factor 25 deregulation contributes to pulmonary fibrosis through alternative polyadenylation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI122106"}], "href": "https://doi.org/10.1172/JCI122106"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30830875"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30830875"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Tingting Weng, Jingjing Huang, Eric J Wagner, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Downregulation of CFIm25 amplifies dermal fibrosis through alternative polyadenylation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1084/jem.20181384"}], "href": "https://doi.org/10.1084/jem.20181384"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31757866"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31757866"}]}]}]}
|
| Synonyms | ACA13 |
| NCBI Gene ID | 654322 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORA13 has 2,027 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 19 datasets.
Click the + buttons to view associations for SNORA13 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of SNORA13 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORA13 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA13 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SNORA13 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORA13 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA13 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORA13 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing SNORA13 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SNORA13 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SNORA13 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of SNORA13 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of SNORA13 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SNORA13 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SNORA13 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORA13 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of SNORA13 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNORA13 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORA13 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of SNORA13 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |