SNORA27 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, H/ACA box 27
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nSarcalumenin (SAR) is a high‐capacity Ca²⁺‐binding protein localized in the sarcoplasmic reticulum (SR) of striated muscle cells, where it plays a pivotal role in regulating intracellular Ca²⁺ cycling. Studies in SAR‐deficient mice have revealed that, although basal muscle force generation may be maintained, the absence of SAR leads to slower relaxation phases after contraction and compromised Ca²⁺ uptake into the SR, ultimately impairing overall Ca²⁺ homeostasis in both skeletal and cardiac muscle cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn skeletal muscle, loss of SAR triggers compensatory mechanisms that affect Ca²⁺ regulatory proteins. For example, enhanced store‐operated Ca²⁺ entry (SOCE) was observed in SAR knockout mice along with an increased expression of MG29, a protein associated with the triad junction. This compensatory adjustment correlated with greater resistance to muscle fatigue under intermittent stimulation. In the heart, SAR deficiency leads to impaired Ca²⁺ reuptake through downregulation of critical proteins like SERCA2a, which becomes particularly detrimental under physiological stress such as endurance exercise or in the aging heart, eventually contributing to signs of heart failure."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditionally, complementary research has highlighted that transcriptional regulators such as Six1 play essential roles in muscle phenotype determination. Overexpression of Six1 in muscle cells not only upregulates fast-twitch muscle-specific genes but also modulates cell cycle progression, thereby influencing muscle fiber composition and function. These findings suggest that the adaptive responses in muscle physiology involve both the intricate regulation of Ca²⁺ handling by proteins like SAR and transcriptional programs controlled by factors like Six1."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Morikatsu Yoshida, Susumu Minamisawa, Miei Shimura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Impaired Ca2+ store functions in skeletal and cardiac muscle cells from sarcalumenin-deficient mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M406618200"}], "href": "https://doi.org/10.1074/jbc.M406618200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15569689"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15569689"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Miei Shimura, Susumu Minamisawa, Hiroshi Takeshima, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Sarcalumenin alleviates stress-induced cardiac dysfunction by improving Ca2+ handling of the sarcoplasmic reticulum."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cardiovasc Res (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/cvr/cvm019"}], "href": "https://doi.org/10.1093/cvr/cvm019"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18006473"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18006473"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xiaoli Zhao, Morikatsu Yoshida, Leticia Brotto, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Enhanced resistance to fatigue and altered calcium handling properties of sarcalumenin knockout mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Physiol Genomics (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/physiolgenomics.00020.2005"}], "href": "https://doi.org/10.1152/physiolgenomics.00020.2005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15998745"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15998745"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Qibin Jiao, Yunzhe Bai, Toru Akaike, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Sarcalumenin is essential for maintaining cardiac function during endurance exercise training."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Heart Circ Physiol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpheart.00946.2008"}], "href": "https://doi.org/10.1152/ajpheart.00946.2008"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19502553"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19502553"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Qibin Jiao, Hiroshi Takeshima, Yoshihiro Ishikawa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Sarcalumenin plays a critical role in age-related cardiac dysfunction due to decreases in SERCA2a expression and activity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Calcium (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ceca.2011.10.003"}], "href": "https://doi.org/10.1016/j.ceca.2011.10.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22119571"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22119571"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Wangjun Wu, Zhuqing Ren, Lin Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Overexpression of Six1 gene suppresses proliferation and enhances expression of fast-type muscle genes in C2C12 myoblasts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biochem (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11010-013-1653-3"}], "href": "https://doi.org/10.1007/s11010-013-1653-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23613228"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23613228"}]}]}]}
Synonyms ACA27
NCBI Gene ID 619499
API
Download Associations
Predicted Functions View SNORA27's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORA27's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORA27's ARCHS4 Predicted Functions.

Functional Associations

SNORA27 has 1,176 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 20 datasets.

Click the + buttons to view associations for SNORA27 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA27 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA27 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORA27 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA27 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA27 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA27 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORA27 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing SNORA27 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORA27 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SNORA27 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of SNORA27 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of SNORA27 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORA27 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA27 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of SNORA27 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SNORA27 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORA27 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA27 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of SNORA27 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.
WikiPathways Pathways 2014 pathways involving SNORA27 protein from the Wikipathways Pathways 2014 dataset.