SNORA49 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, H/ACA box 49
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe collection of studies summarized here elucidates multiple facets of neuromuscular junction (NMJ) formation and stability, with a central focus on rapsyn—a pivotal scaffolding protein required for clustering acetylcholine receptors (AChRs) at the postsynaptic membrane. Several reports describe how rapsyn is involved in synapse‐specific transcriptional programs through interactions with nuclear factors such as Kaiso and delta‑catenin that directly target genes essential for NMJ differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In addition, other work demonstrates that rapsyn serves as a key mediator of agrin‑induced receptor clustering via its associations with beta‑catenin"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "and modulates receptor dynamics by countering calpain protease activity during cholinergic stimulation"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", while Wnt pathway signals can negatively regulate its expression to disperse AChR clusters."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther studies extend these findings by exploring rapsyn’s additional functions. Beyond its classic role as a scaffold, rapsyn has been shown to harbor intrinsic E3 ligase activity that likely influences posttranslational modifications (for example, neddylation) of synaptic proteins."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " It also interacts with a variety of partners—such as PKA type I"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ", α‑actinin"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ", and even cytolinker molecules like plectin"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "—to promote proper receptor immobilization"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "and to maintain synaptic architecture through mechanisms including liquid–liquid phase separation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " Complementary studies using live imaging and biochemical methods further reveal that rapsyn is dynamically trafficked"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": "and that its local concentration correlates with the packing and turnover of AChRs"}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "13", "end_ref": "15"}]}, {"type": "t", "text": ", while genetic or pharmacologic perturbations further highlight its regulatory impact on postsynaptic differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "16"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIt is important to emphasize that despite the initial query regarding the function of SNORA49, none of these abstracts provide any data or discussion on SNORA49. Instead, they collectively advance our understanding of rapsyn’s multifaceted role in NMJ formation, receptor stabilization, and synaptic maintenance. Thus, while the provided literature richly details rapsyn‐dependent mechanisms in neuromuscular connectivity, no insights into SNORA49 function can be drawn from these studies.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Marianna Rodova, Kevin F Kelly, Michael VanSaun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Regulation of the rapsyn promoter by kaiso and delta-catenin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.24.16.7188-7196.2004"}], "href": "https://doi.org/10.1128/MCB.24.16.7188-7196.2004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15282317"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15282317"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Bin Zhang, Shiwen Luo, Xian-Ping Dong, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Rapsyn interaction with calpain stabilizes AChR clusters at the neuromuscular junction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuron.2007.06.031"}], "href": "https://doi.org/10.1016/j.neuron.2007.06.031"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17640526"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17640526"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Jia Wang, Nan-Jie Ruan, Lei Qian, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Wnt/beta-catenin signaling suppresses Rapsyn expression and inhibits acetylcholine receptor clustering at the neuromuscular junction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M709939200"}], "href": "https://doi.org/10.1074/jbc.M709939200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18541538"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18541538"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Lei Li, Yu Cao, Haitao Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Enzymatic Activity of the Scaffold Protein Rapsyn for Synapse Formation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuron.2016.10.023"}], "href": "https://doi.org/10.1016/j.neuron.2016.10.023"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27839998"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27839998"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Kyeong-Rok Choi, Marco Berrera, Markus Reischl, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "alpha-Actinin interacts with rapsyn in agrin-stimulated AChR clustering."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Brain (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1756-6606-1-18"}], "href": "https://doi.org/10.1186/1756-6606-1-18"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19055765"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19055765"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Eva Mihailovska, Marianne Raith, Rocio G Valencia, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Neuromuscular synapse integrity requires linkage of acetylcholine receptors to postsynaptic intermediate filament networks via rapsyn-plectin 1f complexes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.E14-06-1174"}], "href": "https://doi.org/10.1091/mbc.E14-06-1174"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25318670"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25318670"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Joachim Piguet, Christoph Schreiter, Jean-Manuel Segura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Acetylcholine receptor organization in membrane domains in muscle cells: evidence for rapsyn-independent and rapsyn-dependent mechanisms."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M110.139782"}], "href": "https://doi.org/10.1074/jbc.M110.139782"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20978122"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20978122"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Guanglin Xing, Hongyang Jing, Zheng Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Membraneless condensates by Rapsn phase separation as a platform for neuromuscular junction formation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuron.2021.04.021"}], "href": "https://doi.org/10.1016/j.neuron.2021.04.021"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34033754"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34033754"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Othon L Gervásio, William D Phillips "}, {"type": "b", "children": [{"type": "t", "text": "Increased ratio of rapsyn to ACh receptor stabilizes postsynaptic receptors at the mouse neuromuscular synapse."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Physiol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1113/jphysiol.2004.077685"}], "href": "https://doi.org/10.1113/jphysiol.2004.077685"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15550459"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15550459"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Emile Bruneau, Mohammed Akaaboune "}, {"type": "b", "children": [{"type": "t", "text": "The dynamics of the rapsyn scaffolding protein at individual acetylcholine receptor clusters."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M608714200"}], "href": "https://doi.org/10.1074/jbc.M608714200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17283077"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17283077"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Othon L Gervásio, Paul F Armson, William D Phillips "}, {"type": "b", "children": [{"type": "t", "text": "Developmental increase in the amount of rapsyn per acetylcholine receptor promotes postsynaptic receptor packing and stability."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2007.02.008"}], "href": "https://doi.org/10.1016/j.ydbio.2007.02.008"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17362913"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17362913"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Y Lee, J Rudell, M Ferns "}, {"type": "b", "children": [{"type": "t", "text": "Rapsyn interacts with the muscle acetylcholine receptor via alpha-helical domains in the alpha, beta, and epsilon subunit intracellular loops."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuroscience (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuroscience.2009.05.057"}], "href": "https://doi.org/10.1016/j.neuroscience.2009.05.057"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19482062"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19482062"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Dustin Herrmann, Marion Straubinger, Said Hashemolhosseini "}, {"type": "b", "children": [{"type": "t", "text": "Protein kinase CK2 interacts at the neuromuscular synapse with Rapsyn, Rac1, 14-3-3γ, and Dok-7 proteins and phosphorylates the latter two."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M115.647610"}], "href": "https://doi.org/10.1074/jbc.M115.647610"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26198629"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26198629"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Jennifer Brockhausen, Rebecca N Cole, Othon L Gervásio, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Neural agrin increases postsynaptic ACh receptor packing by elevating rapsyn protein at the mouse neuromuscular synapse."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Neurobiol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/dneu.20654"}], "href": "https://doi.org/10.1002/dneu.20654"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18506821"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18506821"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Michele Ettorre, Erika Lorenzetto, Claudia Laperchia, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Glutamatergic neurons induce expression of functional glutamatergic synapses in primary myotubes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0031451"}], "href": "https://doi.org/10.1371/journal.pone.0031451"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22347480"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22347480"}]}]}]}
Synonyms ACA49
NCBI Gene ID 677829
API
Download Associations
Predicted Functions View SNORA49's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORA49's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORA49's ARCHS4 Predicted Functions.

Functional Associations

SNORA49 has 440 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.

Click the + buttons to view associations for SNORA49 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA49 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA49 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORA49 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA49 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA49 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA49 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORA49 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORA49 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SNORA49 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORA49 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA49 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SNORA49 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORA49 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA49 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
Sanger Dependency Map Cancer Cell Line Proteomics cell lines associated with SNORA49 protein from the Sanger Dependency Map Cancer Cell Line Proteomics dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of SNORA49 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.