SNORA54 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, H/ACA box 54
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nExtensive evidence across multiple studies indicates that a key non‐coding RNA—commonly studied as miR‑30e—acts as a versatile regulator of differentiation and tissue homeostasis in a variety of systems. Early investigations highlight that deregulation of microRNAs is linked to complex disorders such as alcohol dependence, suggesting that non‐coding RNA pathways contribute to multifactorial disease risk."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In mesenchymal and progenitor cell populations, miR‑30e governs cell fate decisions by balancing osteoblast and adipocyte differentiation through modulation of the canonical Wnt/β‑catenin cascade, and by influencing osteogenic programs in vascular smooth muscle cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Moreover, in renal tubular epithelial cells, miR‑30e targets key mediators—such as UCP2 and GLIPR‑2—to regulate TGF‑β₁–induced epithelial–mesenchymal transition, while similar regulatory dynamics in neural progenitors (via HtrA1) and skeletal muscle (via Pgc1α) underscore its critical role in developmental homeostasis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional research has revealed that miR‑30e plays an important protective role by mitigating inflammatory and oxidative stress responses. For instance, in Parkinson’s disease models the upregulation of miR‑30e attenuates neuroinflammation through direct targeting of the Nlrp3 inflammasome"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": ", whereas in podocytes facing aldosterone challenge its preservation of mitochondrial function via inhibition of BNIP3L reduces cell apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " In vascular settings, reduced miR‑30e correlates with increased oxidative stress through modulation of TGF‑β–mediated pathways involving NADPH oxidase 4 and Snai1."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": " Furthermore, changes in circulating miR‑30e levels have been associated with smoking‐induced lung injury, underscoring its potential utility as an informative biomarker in pulmonary pathologies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond developmental and inflammatory roles, aberrant expression of miR‑30e has also been implicated in a spectrum of disease processes. In the context of diabetic nephropathy, downregulation of miR‑30e contributes to enhanced expression of pathogenic targets in renal tubular cells, while its deregulation in cardiac tissue modulates hypertrophic responses that precipitate heart failure."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": " Similarly, in thyroid cancer cells miR‑30e loss leads to reduced PTEN expression coupled with decreased apoptosis, suggesting that restoring its normal levels may reinstate tumor‐suppressive functions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": " Recent studies have also begun to unravel complex interactions between miR‑30e and other non‑coding RNAs – for example, long non‑coding RNAs such as SNHG14 have been implicated in diabetic renal pathology, hinting at broader networks of transcriptomic regulation in disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Hiromi Hosako, Gail S Martin, Marianne Barrier, et al. 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Synonyms ACA54
NCBI Gene ID 677833
API
Download Associations
Predicted Functions View SNORA54's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORA54's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORA54's ARCHS4 Predicted Functions.

Functional Associations

SNORA54 has 406 functional associations with biological entities spanning 5 categories (molecular profile, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.

Click the + buttons to view associations for SNORA54 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA54 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA54 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORA54 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA54 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA54 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORA54 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORA54 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SNORA54 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SNORA54 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with SNORA54 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORA54 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA54 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SNORA54 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORA54 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA54 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of SNORA54 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.