| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, H/ACA box 6 |
| Description | Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nOncomodulin, an EF‐hand calcium‐binding protein also known as β‐parvalbumin, is emerging as a critical regulator of calcium homeostasis in sensory cells. Studies have shown that in the cochlea, it is specifically expressed in outer hair cells (OHCs) where its early postnatal onset and precise subcellular localization to the basolateral membrane and hair bundle are thought to support the intricate regulation of Ca²⁺ necessary for tuning auditory sensitivity. In contrast, in vestibular organs its expression is more diffuse and diminishes with age, suggesting distinct mechanistic roles across inner ear regions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its established function in the inner ear, oncomodulin has been implicated in wider neural mechanisms. Notably, its upregulation in selected neuronal populations has been observed in parvalbumin-deficient contexts, indicating a compensatory response in Ca²⁺ buffering within the brain. Moreover, in peripheral neurons, secreted oncomodulin appears to promote regeneration after injury, as evidenced by its role in driving neurite outgrowth and modulating cytokine expression—such as interleukin-6—in dorsal root ganglia following axotomy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFunctional analyses further reveal that oncomodulin’s unique buffering kinetics are pivotal in shaping intracellular Ca²⁺ transients. In cochlear OHCs and transfected cell models, oncomodulin slows Ca²⁺ influx upon stimulation, thereby lowering freely available Ca²⁺ and influencing the maturation of afferent connectivity. These observations underscore its essential role in modulating spontaneous Ca²⁺ activity during critical developmental windows, a process that underlies the refinement of sensory signaling prior to hearing onset."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}, {"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Dwayne D Simmons, Benton Tong, Angela D Schrader, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Oncomodulin identifies different hair cell types in the mammalian inner ear."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Comp Neurol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/cne.22424"}], "href": "https://doi.org/10.1002/cne.22424"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20653034"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20653034"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yang Yang, Kaitlin Murtha, Leslie K Climer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Oncomodulin regulates spontaneous calcium signalling and maturation of afferent innervation in cochlear outer hair cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Physiol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1113/JP284690"}], "href": "https://doi.org/10.1113/JP284690"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37642186"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37642186"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "B Csillik, B Schwaller, A Mihaly, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Upregulated expression of oncomodulin, the beta isoform of parvalbumin, in perikarya and axons in the diencephalon of parvalbumin knockout mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuroscience (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuroscience.2009.10.048"}], "href": "https://doi.org/10.1016/j.neuroscience.2009.10.048"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19874871"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19874871"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Jon P Niemi, Talia DeFrancesco-Oranburg, Andrew Cox, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Conditioning Lesion Response in Dorsal Root Ganglion Neurons Is Inhibited in Oncomodulin Knock-Out Mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "eNeuro (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1523/ENEURO.0477-21.2022"}], "href": "https://doi.org/10.1523/ENEURO.0477-21.2022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35131866"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35131866"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Kaitlin E Murtha, Yang Yang, Federico Ceriani, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Oncomodulin (OCM) uniquely regulates calcium signaling in neonatal cochlear outer hair cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Calcium (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ceca.2022.102613"}], "href": "https://doi.org/10.1016/j.ceca.2022.102613"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35797824"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35797824"}]}]}]}
|
| Synonyms | ACA6 |
| NCBI Gene ID | 574040 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORA6 has 2,216 functional associations with biological entities spanning 5 categories (molecular profile, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 18 datasets.
Click the + buttons to view associations for SNORA6 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORA6 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA6 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SNORA6 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORA6 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORA6 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA6 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORA6 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of SNORA6 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SNORA6 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of SNORA6 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SNORA6 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SNORA6 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORA6 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of SNORA6 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNORA6 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORA6 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of SNORA6 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| WikiPathways Pathways 2014 | pathways involving SNORA6 protein from the Wikipathways Pathways 2014 dataset. | |