| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, H/ACA box 63 |
| Description | Predicted to be involved in RNA processing. Part of box H/ACA RNP complex. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nA series of recent studies have delineated the critical roles of endoplasmic reticulum (ER)‐resident ubiquitin ligases and their associated factors in maintaining protein quality control, regulating lipid metabolism, and coordinating immune and cellular stress responses. For example, one study showed that mPNGase forms a complex with mAMFR to couple retrotranslocation, ubiquitination, and deglycosylation of misfolded glycoproteins ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "]. In another investigation, the involvement of gp78 as the autocrine motility factor receptor was demonstrated in leukemic differentiation, establishing its dual roles in cell motility and proliferation ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "]. Moreover, ER stress was found to stabilize gp78 and enhance ER‐associated degradation (ERAD) ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "], while additional work showed that gp78 promotes metastasis by targeting the metastasis suppressor KAI1 for degradation ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "]. The degradation of misfolded proteins such as the CFTR mutant CFTRΔF508, regulated by gp78’s ubiquitin ligase activity, further underscores its central role in ER quality control ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "]. In the context of neurodegeneration, gp78 has been implicated in the ubiquitination and degradation of proteins like SOD1 and ataxin‐3 ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "], and its role in modulating cell proliferation was confirmed using mammary gland transgenic models ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "]. Other studies have established correlations between AMFR expression and hippocampal function ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "] and have revealed that post‐translational modifications such as palmitoylation can regulate the ER distribution and activity of gp78 ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "]. The regulation of lipid homeostasis in liver is also tightly linked to gp78 activity, as liver‐specific knockout models show altered degradation of the rate‐limiting enzyme HMG-CoA reductase, along with changes in Insig proteins and downstream effects on metabolism ["}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "12"}]}, {"type": "t", "text": "]. In addition, studies have identified the involvement of TRC8 in HMG-CoA reductase degradation ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": "] and have shown that gp78 mediates the degradation of prion protein PrP ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": "]. Further extending the scope of gp78 function, STING-mediated innate immune signaling was found to depend on AMFR and INSIG1, and the coordinated actions of RNF145 with gp78 have been implicated in sterol-accelerated HMG-CoA reductase degradation ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": "], while the dynamic regulation of gp78 by calmodulin was shown to influence proteostasis and ER–mitochondria interactions ["}, {"type": "fg", "children": [{"type": "fg_f", "ref": "17"}]}, {"type": "t", "text": "].\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nNotably, while these studies collectively advance our understanding of ER-associated degradation, lipid regulation, immune signaling, and cellular stress responses, none of them provide any insights into the function of SNORA63. SNORA63—a small nucleolar RNA typically involved in guiding rRNA modification—remains unaddressed within this body of work. Therefore, its potential roles or connections with the aforementioned pathways are yet to be determined and warrant further dedicated investigation.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Guangtao Li, Gang Zhao, Xiaoke Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The AAA ATPase p97 links peptide N-glycanase to the endoplasmic reticulum-associated E3 ligase autocrine motility factor receptor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0602747103"}], "href": "https://doi.org/10.1073/pnas.0602747103"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16709668"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16709668"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Arayo Haga, Sachiko Komazaki, Tatsuyoshi Funasaka, et al. "}, {"type": "b", "children": [{"type": "t", "text": "AMF/G6PI induces differentiation of leukemic cells via an unknown receptor that differs from gp78."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Leuk Lymphoma (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/10428190600773263"}], "href": "https://doi.org/10.1080/10428190600773263"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17071500"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17071500"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yuxian Shen, Petek Ballar, Andria Apostolou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ER stress differentially regulates the stabilities of ERAD ubiquitin ligases and their substrates."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2006.11.121"}], "href": "https://doi.org/10.1016/j.bbrc.2006.11.121"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17157811"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17157811"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yien Che Tsai, Arnulfo Mendoza, Jennifer M Mariano, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The ubiquitin ligase gp78 promotes sarcoma metastasis by targeting KAI1 for degradation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Med (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nm1686"}], "href": "https://doi.org/10.1038/nm1686"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18037895"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18037895"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Daisuke Morito, Kazuyoshi Hirao, Yukako Oda, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Gp78 cooperates with RMA1 in endoplasmic reticulum-associated degradation of CFTRDeltaF508."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e07-06-0601"}], "href": "https://doi.org/10.1091/mbc.e07-06-0601"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18216283"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18216283"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Zheng Ying, Hongfeng Wang, Huadong Fan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Gp78, an ER associated E3, promotes SOD1 and ataxin-3 degradation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddp380"}], "href": "https://doi.org/10.1093/hmg/ddp380"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19661182"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19661182"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Bharat Joshi, Lei Li, Ivan R Nabi "}, {"type": "b", "children": [{"type": "t", "text": "A role for KAI1 in promotion of cell proliferation and mammary gland hyperplasia by the gp78 ubiquitin ligase."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M109.074344"}], "href": "https://doi.org/10.1074/jbc.M109.074344"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20089858"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20089858"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Yong Yang, Xiao-Rui Cheng, Gui-Rong Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Autocrine motility factor receptor is involved in the process of learning and memory in the central nervous system."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Behav Brain Res (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbr.2012.01.043"}], "href": "https://doi.org/10.1016/j.bbr.2012.01.043"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22313999"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22313999"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Maria Fairbank, Kun Huang, Alaa El-Husseini, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RING finger palmitoylation of the endoplasmic reticulum Gp78 E3 ubiquitin ligase."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FEBS Lett (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.febslet.2012.06.011"}], "href": "https://doi.org/10.1016/j.febslet.2012.06.011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22728137"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22728137"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Tong-Fei Liu, Jing-Jie Tang, Pei-Shan Li, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Role of glycoprotein 78 and cidec in hepatic steatosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2017.6834"}], "href": "https://doi.org/10.3892/mmr.2017.6834"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28656280"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28656280"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Yien Che Tsai, Gil S Leichner, Margaret M P Pearce, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Calmodulin regulates MGRN1-GP78 interaction mediated ubiquitin proteasomal degradation system."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FASEB J (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1096/fj.201701413RRR"}], "href": "https://doi.org/10.1096/fj.201701413RRR"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30230921"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30230921"}]}]}]}
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| Synonyms | E3-2, RNU107, SNORA63A, ELF-4AII, RNE3 |
| NCBI Gene ID | 6043 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORA63 has 1,388 functional associations with biological entities spanning 5 categories (molecular profile, functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 21 datasets.
Click the + buttons to view associations for SNORA63 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORA63 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA63 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SNORA63 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORA63 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORA63 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA63 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORA63 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing SNORA63 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SNORA63 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of SNORA63 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SNORA63 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of SNORA63 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| HPA Tissue Protein Expression Profiles | tissues with high or low expression of SNORA63 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SNORA63 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORA63 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of SNORA63 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of SNORA63 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNORA63 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORA63 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of SNORA63 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| WikiPathways Pathways 2014 | pathways involving SNORA63 protein from the Wikipathways Pathways 2014 dataset. | |