| HGNC Family | Non-coding RNAs |
| Name | small nucleolar RNA, H/ACA box 64 |
| Description | Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nA systematic review of the provided abstracts reveals that none describe or investigate SNORA64. SNORA64 is a small nucleolar RNA known in other contexts for guiding chemical modifications of ribosomal RNAs, yet its function is neither explored nor mentioned in these studies. Instead, the abstracts center on signaling proteins—most notably the Frizzled receptor Fzd9 and the TMEM176A/B ion channels—which modulate key processes in bone metabolism, hippocampal development, immune cell function, and neuronal guidance."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nFor example, several studies demonstrate that Fzd9 is critical in mediating non-canonical Wnt signaling that supports osteoblast function, bone remodeling, and fracture repair, without affecting canonical β-catenin-dependent pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Parallel work in the hippocampus indicates that Fzd9 influences neuronal survival, synaptogenesis, and overall circuit development, findings that may help explain aspects of neurodevelopmental disorders such as Williams syndrome."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional investigations focus on the intracellular ion channels TMEM176A and TMEM176B, which are implicated in the modulation of dendritic cell maturation and antigen presentation, as well as in regulating type 17 immune responses."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "11"}]}, {"type": "t", "text": " Although these publications strongly advance our understanding of Wnt signaling and immune regulatory circuits, they do not extend any mechanistic insight or functional role to SNORA64.\n"}]}]}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Chunjie Zhao, Samuel J Pleasure "}, {"type": "b", "children": [{"type": "t", "text": "Frizzled-9 promoter drives expression of transgenes in the medial wall of the cortex and its chief derivative the hippocampus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genesis (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/gene.20058"}], "href": "https://doi.org/10.1002/gene.20058"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15354291"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15354291"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Chunjie Zhao, Carmen Avilés, Regina A Abel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Hippocampal and visuospatial learning defects in mice with a deletion of frizzled 9, a gene in the Williams syndrome deletion interval."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.01871"}], "href": "https://doi.org/10.1242/dev.01871"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15930120"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15930120"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Joachim Albers, Jochen Schulze, F Timo Beil, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Control of bone formation by the serpentine receptor Frizzled-9."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.201008012"}], "href": "https://doi.org/10.1083/jcb.201008012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21402791"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21402791"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Aline Heilmann, Thorsten Schinke, Ronny Bindl, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Wnt serpentine receptor Frizzled-9 regulates new bone formation in fracture healing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0084232"}], "href": "https://doi.org/10.1371/journal.pone.0084232"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24391920"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24391920"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Chunjie Zhao, Samuel J Pleasure "}, {"type": "b", "children": [{"type": "t", "text": "Frizzled9 protein is regionally expressed in the developing medial cortical wall and the cells derived from this region."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain Res Dev Brain Res (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.devbrainres.2005.02.018"}], "href": "https://doi.org/10.1016/j.devbrainres.2005.02.018"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15939089"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15939089"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Valerie T Ramírez, Eva Ramos-Fernández, Juan Pablo Henríquez, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Wnt-5a/Frizzled9 Receptor Signaling through the Gαo-Gβγ Complex Regulates Dendritic Spine Formation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M116.722132"}], "href": "https://doi.org/10.1074/jbc.M116.722132"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27402827"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27402827"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "S M Shah, Y-J Kang, B L Christensen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression of Wnt receptors in adult spiral ganglion neurons: frizzled 9 localization at growth cones of regenerating neurites."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuroscience (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuroscience.2009.08.049"}], "href": "https://doi.org/10.1016/j.neuroscience.2009.08.049"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19716861"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19716861"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Thomas Condamine, Laetitia Le Texier, Duncan Howie, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tmem176B and Tmem176A are associated with the immature state of dendritic cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Leukoc Biol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1189/jlb.1109738"}], "href": "https://doi.org/10.1189/jlb.1109738"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20501748"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20501748"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Mariano F Zacarías-Fluck, Toni Jauset, Sandra Martínez-Martín, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Wnt signaling receptor Fzd9 is essential for Myc-driven tumorigenesis in pancreatic islets."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Life Sci Alliance (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26508/lsa.201900490"}], "href": "https://doi.org/10.26508/lsa.201900490"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33653688"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33653688"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Melanie Lancien, Geraldine Bienvenu, Sonia Salle, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Dendritic Cells Require TMEM176A/B Ion Channels for Optimal MHC Class II Antigen Presentation to Naive CD4"}, {"type": "a", "children": [{"type": "t", "text": "sup"}], "href": "sup"}, {"type": "t", "text": "+"}, {"type": "a", "children": [{"type": "t", "text": "/sup"}], "href": "/sup"}, {"type": "t", "text": " T Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.2000498"}], "href": "https://doi.org/10.4049/jimmunol.2000498"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34233909"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34233909"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Lucile Drujont, Aurélie Lemoine, Aurélie Moreau, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RORγt+ cells selectively express redundant cation channels linked to the Golgi apparatus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep23682"}], "href": "https://doi.org/10.1038/srep23682"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27009467"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27009467"}]}]}]}
|
| Synonyms | U64, RNU64 |
| NCBI Gene ID | 26784 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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SNORA64 has 2,418 functional associations with biological entities spanning 5 categories (molecular profile, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 23 datasets.
Click the + buttons to view associations for SNORA64 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORA64 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of SNORA64 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA64 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of SNORA64 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORA64 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| CTD Gene-Chemical Interactions | chemicals interacting with SNORA64 gene/protein from the curated CTD Gene-Chemical Interactions dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORA64 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA64 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of SNORA64 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| ESCAPE Omics Signatures of Genes and Proteins for Stem Cells | PubMedIDs of publications reporting gene signatures containing SNORA64 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing SNORA64 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of SNORA64 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of SNORA64 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of SNORA64 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of SNORA64 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of SNORA64 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of SNORA64 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of SNORA64 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of SNORA64 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of SNORA64 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at SNORA64 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of SNORA64 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| WikiPathways Pathways 2014 | pathways involving SNORA64 protein from the Wikipathways Pathways 2014 dataset. | |