SNORA78 Gene

HGNC Family Non-coding RNAs
Name small nucleolar RNA, H/ACA box 78
Description Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough the supplied studies encompass diverse aspects of cellular regulation—from ETS transcription factor‐mediated neuronal maturation and macrophage differentiation to complex signaling pathways involving MAP kinases and phosphoinositide phosphatases—the specific function of SNORA78 is not directly addressed in any of these reports."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In contrast to the detailed analysis of transcriptional regulators such as the ETS family members (e.g., ETV3) and related modulators, SNORA78—a conserved H/ACA box small nucleolar RNA—is traditionally understood to guide site‐specific pseudouridylation during ribosomal RNA processing and ribosome biogenesis, functions that remain unexplored in the context of these studies.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther investigations highlighted here focus on the impact of kinase signaling on transcription factor function and feedback regulation; for example, ERK2‐mediated phosphorylation of ETS regulators modulates their DNA binding and hence the transcription of thousands of target genes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " These insights reveal complex networks that determine cell differentiation and homeostasis, yet they do not incorporate any functional elucidation of SNORA78.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA further set of studies describes the roles of synaptojanins and associated molecules in processes ranging from vesicle recycling and neurotransmission to spermatogenesis and intestinal physiology."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "8"}]}, {"type": "t", "text": " Although these findings broaden our understanding of cellular signaling and membrane dynamics, they similarly omit any discussion on the potential regulatory or ribonucleoprotein assembly functions of SNORA78.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn summary, while the included abstracts provide valuable insights into transcriptional control, signal transduction, and membrane trafficking in diverse biological contexts, none of them directly address the function of SNORA78. Generally, SNORA78 is known as one of the small nucleolar RNAs that guide post‐transcriptional modifications of rRNA, playing a key role in the maturation of the ribosome. Therefore, establishing whether and how SNORA78 might intersect with the aforementioned regulatory networks will require dedicated studies in RNA biology.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Simon Hippenmeyer, Eline Vrieseling, Markus Sigrist, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A developmental switch in the response of DRG neurons to ETS transcription factor signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Biol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pbio.0030159"}], "href": "https://doi.org/10.1371/journal.pbio.0030159"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15836427"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15836427"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Karim C El Kasmi, Amber M Smith, Lynn Williams, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cutting edge: A transcriptional repressor and corepressor induced by the STAT3-regulated anti-inflammatory signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.179.11.7215"}], "href": "https://doi.org/10.4049/jimmunol.179.11.7215"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18025162"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18025162"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Scott M Carlson, Candace R Chouinard, Adam Labadorf, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Large-scale discovery of ERK2 substrates identifies ERK-mediated transcriptional regulation by ETV3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Signal (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/scisignal.2002010"}], "href": "https://doi.org/10.1126/scisignal.2002010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22028470"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22028470"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Dominique Sawka-Verhelle, Laure Escoubet-Lozach, Amy L Fong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PE-1/METS, an antiproliferative Ets repressor factor, is induced by CREB-1/CREM-1 during macrophage differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M311991200"}], "href": "https://doi.org/10.1074/jbc.M311991200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14754893"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14754893"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Shehnaaz S M Manji, Louise H Williams, Kerry A Miller, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A mutation in synaptojanin 2 causes progressive hearing loss in the ENU-mutagenised mouse strain Mozart."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0017607"}], "href": "https://doi.org/10.1371/journal.pone.0017607"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21423608"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21423608"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "John C Schimenti, Jennifer L Reynolds, Antonio Planchart "}, {"type": "b", "children": [{"type": "t", "text": "Mutations in Serac1 or Synj2 cause proximal t haplotype-mediated male mouse sterility but not transmission ratio distortion."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0407970102"}], "href": "https://doi.org/10.1073/pnas.0407970102"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15722415"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15722415"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Antonio Planchart "}, {"type": "b", "children": [{"type": "t", "text": "Analysis of an intronic promoter within Synj2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2013.09.115"}], "href": "https://doi.org/10.1016/j.bbrc.2013.09.115"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24103750"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24103750"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "María Dolores Vázquez-Carretero, Ana Eloisa Carvajal, José Manuel Serrano-Morales, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Synaptojanins in the murine small and large intestine."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Bioenerg Biomembr (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10863-016-9689-1"}], "href": "https://doi.org/10.1007/s10863-016-9689-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27878645"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27878645"}]}]}]}
Synonyms ACA64
NCBI Gene ID 677844
API
Download Associations
Predicted Functions View SNORA78's ARCHS4 Predicted Functions.
Co-expressed Genes View SNORA78's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View SNORA78's ARCHS4 Predicted Functions.

Functional Associations

SNORA78 has 1,624 functional associations with biological entities spanning 6 categories (molecular profile, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 18 datasets.

Click the + buttons to view associations for SNORA78 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA78 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA78 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of SNORA78 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA78 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA78 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of SNORA78 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of SNORA78 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
ESCAPE Omics Signatures of Genes and Proteins for Stem Cells PubMedIDs of publications reporting gene signatures containing SNORA78 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of SNORA78 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of SNORA78 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of SNORA78 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of SNORA78 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of SNORA78 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of SNORA78 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of SNORA78 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of SNORA78 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at SNORA78 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of SNORA78 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.